JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PKNOX1_chr21_42969562_43038931	0/0	t0030	3980	2	0	2	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0031	3982	1	1	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0032	3972	1	1	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0033	4000	1	0	1	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0034	3980	1	1	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0035	3978	1	1	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0036	3978	1	0	0	1	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0037	3980	1	0	1	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0038	3980	1	0	0	1	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0039	3980	1	1	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0040	3980	1	1	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0041	3980	1	0	0	1	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0042	3982	1	1	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0043	3982	1	1	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0044	3973	1	1	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0045	3980	1	1	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0046	3980	1	0	1	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0047	3980	1	1	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0048	3980	1	0	0	1	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0049	3982	1	1	0	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0050	3982	1	0	0	0	0	1	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0051	3990	1	0	1	0	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX1_chr21_42969562_43038931	0/0	t0052	3990	1	0	0	1	0	0	copy fasta	PKNOX1	chr21	42969562	43038931
PKNOX2_chr11_125159751_125438389	0/1	t0001	2224	59	15	10	15	2	16	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0002	2225	50	7	11	27	1	4	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0003	2224	36	3	5	24	1	3	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	1/0	t0004	2224	30	14	7	0	2	6	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0005	2224	13	12	0	0	0	1	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0006	2224	13	12	1	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0007	2224	5	4	0	0	0	1	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0008	2224	3	3	0	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0009	2224	3	3	0	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0010	2227	2	2	0	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0011	2224	2	0	2	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0012	2224	1	0	0	0	0	1	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0013	2224	1	0	1	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0014	2182	1	1	0	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0015	2224	1	0	1	0	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0016	2224	1	0	0	1	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKNOX2_chr11_125159751_125438389	0/0	t0017	2225	1	0	0	1	0	0	copy fasta	PKNOX2	chr11	125159751	125438389
PKP1_chr1_201278506_201337989	0/0	t0001	3146	117	6	27	64	3	17	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0002	3146	42	2	7	25	4	4	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0003	3158	29	17	2	5	1	4	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/1	t0004	3146	18	1	0	15	0	1	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0005	3158	12	3	3	0	1	5	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	1/0	t0006	3146	11	10	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0007	3158	8	8	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0008	3158	8	2	2	3	1	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0009	3158	7	7	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0010	3146	7	0	4	2	0	1	copy fasta	PKP1	chr1	201278506	201337989