JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PKP1_chr1_201278506_201337989	0/0	t0011	3146	6	3	1	2	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0012	3146	5	1	1	0	0	3	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0013	3146	5	4	1	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0014	3158	4	3	1	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0015	3158	3	0	0	2	0	1	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0016	3158	3	3	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0017	3158	3	3	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0018	3158	3	3	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0019	3158	3	0	3	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0020	3146	3	0	0	3	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0021	3146	3	0	0	3	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0022	3146	2	0	0	0	0	2	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0023	3146	2	2	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0024	3146	2	2	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0025	3158	2	2	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0026	3146	2	0	0	2	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0027	3158	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0028	3158	1	0	0	1	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0029	3158	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0030	3146	1	0	0	1	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0031	3146	1	0	1	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0032	3158	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0033	3146	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0034	3146	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0035	3158	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0036	3158	1	0	0	0	1	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0037	3158	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0038	3158	1	0	0	0	0	1	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0039	3158	1	0	1	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0040	3146	1	0	0	1	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0041	3158	1	0	1	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0042	3146	1	0	0	1	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0043	3158	1	0	0	1	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0044	3146	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0045	3146	1	0	0	1	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0046	3158	1	0	1	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0047	3146	1	0	0	0	0	1	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0048	3158	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0049	3158	1	0	0	0	1	0	copy fasta	PKP1	chr1	201278506	201337989
PKP1_chr1_201278506_201337989	0/0	t0050	3158	1	1	0	0	0	0	copy fasta	PKP1	chr1	201278506	201337989
PKP2_chr12_32785755_32901777	0/1	t0001	1715	102	23	29	28	6	15	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0002	1715	86	6	12	56	2	10	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0003	1716	54	16	7	23	0	8	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	1/0	t0004	1716	37	8	6	17	1	4	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0005	1721	28	20	3	3	0	2	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0006	1716	11	1	6	1	1	2	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0007	1721	6	6	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0008	1716	4	4	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0009	1715	2	0	0	1	0	1	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0010	1716	2	1	1	0	0	0	copy fasta	PKP2	chr12	32785755	32901777