JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PKP2_chr12_32785755_32901777	0/0	t0011	1715	2	2	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0012	1715	1	1	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0013	1716	1	1	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0014	1715	1	0	0	1	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0015	1715	1	0	1	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0016	1715	1	1	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0017	1716	1	1	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0018	1716	1	1	0	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP2_chr12_32785755_32901777	0/0	t0019	1715	1	0	1	0	0	0	copy fasta	PKP2	chr12	32785755	32901777
PKP3_chr11_389209_409908	1/1	t0001	424	209	65	42	68	8	24	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	t0002	424	2	0	0	2	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	t0003	424	2	2	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	t0004	424	2	2	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP3_chr11_389209_409908	0/0	t0005	421	1	1	0	0	0	0	copy fasta	PKP3	chr11	389209	409908
PKP4_chr2_158451952_158686429	0/1	t0001	1025	257	73	28	114	11	30	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	t0002	1025	22	2	4	9	4	3	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	1/0	t0003	1025	19	6	3	4	3	2	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	t0004	1025	2	2	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	t0005	1025	2	0	2	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	t0006	1025	1	0	0	0	0	1	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	t0007	1025	1	0	0	1	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	t0008	1025	1	0	0	1	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	t0009	1025	1	1	0	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	t0010	1025	1	0	1	0	0	0	copy fasta	PKP4	chr2	158451952	158686429
PKP4_chr2_158451952_158686429	0/0	t0011	1025	1	0	0	1	0	0	copy fasta	PKP4	chr2	158451952	158686429
PLA1A_chr3_119592885_119634811	1/1	t0001	373	135	23	35	61	2	12	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	t0002	375	77	31	19	22	3	2	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	t0003	375	58	0	2	52	1	3	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	t0004	377	58	13	6	36	0	3	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	t0005	376	51	11	9	12	4	15	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	t0006	376	21	13	3	5	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	t0007	374	6	0	3	0	2	1	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	t0008	374	4	0	0	4	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	t0009	377	4	1	0	2	0	1	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	t0010	373	3	0	2	0	0	1	copy fasta	PLA1A	chr3	119592885	119634811
PLA1A_chr3_119592885_119634811	0/0	t0011	374	3	2	1	0	0	0	copy fasta	PLA1A	chr3	119592885	119634811
PLA2G10_chr16_14667548_14699308	0/1	t0001	139	405	94	74	175	16	45	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	t0002	139	1	0	0	1	0	0	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G10_chr16_14667548_14699308	0/0	t0003	60	1	0	0	0	0	1	copy fasta	PLA2G10	chr16	14667548	14699308
PLA2G12A_chr4_109704989_109735070	1/0	t0001	4650	92	11	25	46	3	6	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/1	t0002	4651	75	2	22	29	10	11	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	t0003	4652	55	18	7	22	2	6	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	t0004	4651	19	4	2	10	1	2	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	t0005	4650	16	0	0	16	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	t0006	4652	15	14	1	0	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	t0007	4650	11	3	3	0	0	5	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	t0008	4653	9	0	0	8	0	1	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	t0009	4651	9	3	2	2	0	2	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	t0010	4649	9	0	2	5	0	2	copy fasta	PLA2G12A	chr4	109704989	109735070
PLA2G12A_chr4_109704989_109735070	0/0	t0011	4650	8	8	0	0	0	0	copy fasta	PLA2G12A	chr4	109704989	109735070