Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATL3_chr11_63619087_63676376	1/1	t0001	5274	152	45	41	37	7	20	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0002	5275	11	1	5	3	0	2	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0003	5273	10	0	0	8	2	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0004	5261	8	2	2	0	0	4	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0005	5274	7	0	3	0	0	4	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0006	5274	6	0	0	6	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0007	5270	5	4	1	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0008	5274	5	4	1	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0009	5267	5	5	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0010	5274	4	3	1	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0011	5271	3	3	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0012	5273	3	3	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0013	5275	3	0	2	1	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0014	5268	2	2	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0015	5262	2	0	0	0	0	2	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0016	5273	2	0	0	2	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0017	5272	2	2	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0018	5261	1	0	0	0	0	1	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0019	5273	1	1	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0020	5274	1	1	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0021	5274	1	1	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0022	5274	1	1	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0023	5275	1	1	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0024	5266	1	1	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0025	5274	1	0	0	0	1	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0026	5273	1	0	0	1	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0027	5274	1	1	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0028	5274	1	0	0	0	0	1	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	t0029	5273	1	1	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATMIN_chr16_81030842_81052350	0/1	t0001	2412	140	25	32	60	8	14	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0002	2414	50	3	7	37	1	2	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0003	2415	42	0	7	34	0	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0004	2414	22	0	6	10	0	6	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0005	2409	12	10	1	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0006	2417	11	4	1	6	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0007	2410	8	8	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0008	2411	8	2	0	6	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0009	2416	5	3	0	1	0	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0010	2423	5	0	0	5	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0011	2416	5	1	1	1	1	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0012	2410	5	0	3	0	0	2	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	1/0	t0013	2410	4	2	1	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0014	2427	4	0	0	4	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0015	2412	4	3	1	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0016	2404	4	2	0	1	0	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0017	2408	3	3	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0018	2413	3	0	1	1	0	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0019	2423	3	1	1	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0020	2410	3	3	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0021	2413	3	0	1	1	0	1	copy fasta	ATMIN	chr16	81030842	81052350