JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLA2G15_chr16_68240373_68266058	0/0	t0003	1456	9	8	1	0	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	t0004	1456	5	0	4	0	1	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	t0005	1435	4	4	0	0	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	t0006	1456	3	3	0	0	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	t0007	1456	3	3	0	0	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	t0008	1456	3	3	0	0	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	t0009	1456	1	0	0	0	1	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	t0010	1456	1	1	0	0	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	t0011	1456	1	1	0	0	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G15_chr16_68240373_68266058	0/0	t0012	1456	1	1	0	0	0	0	copy fasta	PLA2G15	chr16	68240373	68266058
PLA2G1B_chr12_120317115_120332779	1/1	t0001	105	399	92	63	186	16	40	copy fasta	PLA2G1B	chr12	120317115	120332779
PLA2G1B_chr12_120317115_120332779	0/0	t0002	105	5	4	1	0	0	0	copy fasta	PLA2G1B	chr12	120317115	120332779
PLA2G2A_chr1_19970435_19984618	1/1	t0001	412	397	95	65	177	16	42	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2A_chr1_19970435_19984618	0/0	t0002	412	79	1	16	53	2	7	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2A_chr1_19970435_19984618	0/0	t0003	412	1	0	0	0	0	1	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2A_chr1_19970435_19984618	0/0	t0004	412	1	1	0	0	0	0	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2A_chr1_19970435_19984618	0/0	t0005	412	1	1	0	0	0	0	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2A_chr1_19970435_19984618	0/0	t0006	412	1	1	0	0	0	0	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2A_chr1_19970435_19984618	0/0	t0007	412	1	1	0	0	0	0	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2A_chr1_19970435_19984618	0/0	t0008	412	1	0	1	0	0	0	copy fasta	PLA2G2A	chr1	19970435	19984618
PLA2G2C_chr1_20158055_20191518	0/0	t0001	1172	387	78	75	172	16	46	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	t0002	1172	9	9	0	0	0	0	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	t0003	1172	5	4	1	0	0	0	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	t0004	1172	1	0	0	1	0	0	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	t0005	1172	1	0	0	1	0	0	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	t0006	1172	1	1	0	0	0	0	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	t0007	1172	1	1	0	0	0	0	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2C_chr1_20158055_20191518	0/0	t0008	1172	1	1	0	0	0	0	copy fasta	PLA2G2C	chr1	20158055	20191518
PLA2G2D_chr1_20106939_20124536	0/1	t0001	2214	179	34	18	112	2	12	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	1/0	t0002	2214	109	5	25	55	5	18	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0003	2214	70	14	19	17	7	13	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0004	2214	35	24	7	2	0	2	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0005	2214	18	1	5	7	2	3	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0006	2214	11	0	0	10	0	1	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0007	2214	6	5	1	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0008	2214	6	5	1	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0009	2214	4	3	1	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0010	2207	3	0	0	1	2	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0011	2214	2	2	0	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0012	2214	2	0	0	2	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0013	2214	2	2	0	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0014	2214	2	0	0	2	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0015	2214	1	1	0	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0016	2214	1	1	0	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0017	2214	1	0	0	1	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0018	2214	1	0	0	1	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0019	2214	1	0	0	1	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0020	2214	1	0	1	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0021	2214	1	0	1	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0022	2214	1	1	0	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536