JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLA2G2D_chr1_20106939_20124536	0/0	t0023	2214	1	0	0	0	0	1	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0024	2214	1	0	1	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0025	2227	1	0	0	1	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0026	2214	1	1	0	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0027	2214	1	0	0	1	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0028	2214	1	1	0	0	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2D_chr1_20106939_20124536	0/0	t0029	2202	1	0	0	1	0	0	copy fasta	PLA2G2D	chr1	20106939	20124536
PLA2G2E_chr1_19915009_19928617	1/1	t0001	357	403	90	79	166	18	48	copy fasta	PLA2G2E	chr1	19915009	19928617
PLA2G2E_chr1_19915009_19928617	0/0	t0002	357	5	5	0	0	0	0	copy fasta	PLA2G2E	chr1	19915009	19928617
PLA2G2E_chr1_19915009_19928617	0/0	t0003	357	1	1	0	0	0	0	copy fasta	PLA2G2E	chr1	19915009	19928617
PLA2G2E_chr1_19915009_19928617	0/0	t0004	357	1	0	1	0	0	0	copy fasta	PLA2G2E	chr1	19915009	19928617
PLA2G2F_chr1_20134323_20155381	0/1	t0001	2086	179	24	27	114	4	9	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	1/0	t0002	2086	99	6	33	33	9	17	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0003	2086	48	2	7	24	3	12	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0004	2086	41	21	5	8	2	5	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0005	2087	13	11	0	0	0	2	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0006	2087	12	3	7	1	0	1	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0007	2087	10	8	0	2	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0008	2086	5	3	0	1	0	1	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0009	2086	4	0	0	4	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0010	2086	4	0	0	4	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0011	2086	3	3	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0012	2086	2	1	1	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0013	2087	2	2	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0014	2087	2	2	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0015	2086	2	0	0	2	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0016	2074	2	0	0	2	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0017	2086	2	2	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0018	2087	2	2	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0019	2087	1	1	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0020	2086	1	1	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0021	2087	1	1	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0022	2087	1	1	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0023	2086	1	0	0	1	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0024	2086	1	1	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0025	2086	1	0	1	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0026	2086	1	1	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0027	2086	1	0	0	0	0	1	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0028	2086	1	1	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0029	2087	1	0	1	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0030	2087	1	1	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0031	2086	1	0	0	1	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0032	2086	1	0	0	1	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0033	2086	1	0	0	1	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0034	2087	1	1	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0035	2086	1	0	0	1	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G2F_chr1_20134323_20155381	0/0	t0036	2181	1	1	0	0	0	0	copy fasta	PLA2G2F	chr1	20134323	20155381
PLA2G3_chr22_31129807_31145508	0/0	t0001	1071	133	8	24	87	1	13	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/1	t0002	1071	97	24	21	36	5	10	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	1/0	t0003	1071	96	35	22	30	7	1	copy fasta	PLA2G3	chr22	31129807	31145508