JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLA2G3_chr22_31129807_31145508	0/0	t0004	1071	66	0	0	66	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	t0005	1071	61	19	17	2	5	18	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	t0006	1071	5	5	0	0	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	t0007	1071	2	1	1	0	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	t0008	1071	2	0	0	0	0	2	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	t0009	1071	1	0	0	1	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G3_chr22_31129807_31145508	0/0	t0010	1071	1	0	1	0	0	0	copy fasta	PLA2G3	chr22	31129807	31145508
PLA2G4A_chr1_186823949_186993981	1/1	t0001	630	298	80	49	114	13	40	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	t0002	630	11	4	4	0	1	2	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4A_chr1_186823949_186993981	0/0	t0003	630	1	0	1	0	0	0	copy fasta	PLA2G4A	chr1	186823949	186993981
PLA2G4B_chr15_41833847_41853143	0/1	t0001	351	305	51	66	138	12	37	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	1/0	t0002	351	100	47	14	25	2	11	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4B_chr15_41833847_41853143	0/0	t0003	351	1	0	0	1	0	0	copy fasta	PLA2G4B	chr15	41833847	41853143
PLA2G4C_chr19_48042846_48115817	0/0	t0001	889	86	16	14	43	6	7	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0002	861	51	2	23	12	4	10	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0003	916	42	15	4	21	0	2	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/1	t0004	889	25	6	9	6	1	2	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	1/0	t0005	861	20	5	9	2	0	3	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0006	915	15	13	0	1	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0007	915	14	9	0	3	1	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0008	916	13	10	0	2	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0009	888	12	1	6	3	0	2	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0010	889	9	0	0	7	0	2	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0011	916	4	0	0	4	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0012	888	4	4	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0013	862	3	0	1	0	1	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0014	888	3	1	2	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0015	888	3	3	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0016	862	2	0	0	0	1	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0017	861	2	0	0	1	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0018	889	1	0	0	1	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0019	916	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0020	916	1	0	0	0	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0021	916	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0022	916	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0023	861	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0024	888	1	0	0	1	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0025	888	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0026	915	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0027	915	1	0	0	1	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0028	942	1	0	0	0	0	1	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0029	888	1	1	0	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0030	888	1	0	1	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4C_chr19_48042846_48115817	0/0	t0031	915	1	0	1	0	0	0	copy fasta	PLA2G4C	chr19	48042846	48115817
PLA2G4D_chr15_42062009_42099562	1/0	t0001	1810	178	42	19	92	5	19	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/1	t0002	1811	154	21	34	75	8	15	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0003	1811	53	14	6	27	2	4	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0004	1812	16	2	8	0	3	3	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0005	1810	10	0	0	10	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0006	1809	7	5	0	2	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562