JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLA2G4D_chr15_42062009_42099562	0/0	t0007	1810	3	2	0	1	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0008	1812	2	2	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0009	1811	1	0	0	1	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0010	1811	1	0	1	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0011	1811	1	0	0	0	0	1	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0012	1810	1	0	1	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0013	1810	1	0	1	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0014	1810	1	1	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0015	1811	1	1	0	0	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0016	1810	1	0	0	1	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4D_chr15_42062009_42099562	0/0	t0017	1810	1	0	0	1	0	0	copy fasta	PLA2G4D	chr15	42062009	42099562
PLA2G4E_chr15_41976582_42026042	0/0	t0001	2185	140	25	32	67	9	7	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0002	2185	127	32	18	50	2	25	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	1/0	t0003	2185	84	2	13	55	3	10	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0004	2185	20	19	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0005	2185	13	6	0	5	0	2	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0006	2185	13	0	4	8	0	1	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0007	2184	6	0	3	3	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0008	2185	3	3	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0009	2185	2	2	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0010	2185	2	0	0	1	0	1	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0011	2185	2	0	0	2	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0012	2185	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0013	2185	1	0	0	1	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0014	2185	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0015	2185	1	0	0	1	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/1	t0016	2185	1	0	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0017	2185	1	0	0	1	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0018	2185	1	0	0	0	0	1	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0019	2185	1	0	0	0	0	1	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0020	2185	1	0	1	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4E_chr15_41976582_42026042	0/0	t0021	2185	1	1	0	0	0	0	copy fasta	PLA2G4E	chr15	41976582	42026042
PLA2G4F_chr15_42134034_42161636	0/0	t0001	3038	144	11	36	76	6	15	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/1	t0002	3038	97	19	23	37	8	9	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0003	3038	41	13	6	10	0	12	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0004	3038	35	0	0	33	0	2	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0005	3031	32	0	0	31	0	1	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0006	3038	11	10	1	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0007	3038	8	7	1	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0008	3038	7	7	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	1/0	t0009	3038	7	0	0	6	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0010	3038	5	5	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0011	3038	3	0	2	0	0	1	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0012	3038	3	0	0	3	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0013	3038	2	0	0	0	2	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0014	3038	2	0	1	0	1	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0015	3038	2	2	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0016	3038	2	2	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0017	3038	2	2	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0018	3038	2	2	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636