JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLA2G4F_chr15_42134034_42161636	0/0	t0019	3038	2	2	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0020	3038	2	0	0	0	0	2	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0021	3038	2	0	2	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0022	3038	2	2	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0023	3038	2	0	0	0	0	2	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0024	3038	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0025	3038	1	0	1	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0026	3027	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0027	3038	1	0	0	0	1	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0028	3038	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0029	3031	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0030	3038	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0031	3038	1	0	0	0	0	1	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0032	3031	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0033	3038	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0034	3038	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0035	3038	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0036	3038	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0037	3038	1	0	0	0	0	1	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0038	3038	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0039	3038	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0040	3038	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0041	3038	1	0	1	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	t0042	3038	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G5_chr1_20065194_20096911	1/1	t0001	1502	172	51	32	54	10	23	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0002	1502	69	1	7	48	4	9	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0003	1502	57	25	13	17	0	2	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0004	1502	41	1	12	25	0	3	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0005	1502	18	2	5	4	2	5	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0006	1502	14	0	1	13	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0007	1503	14	0	0	14	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0008	1502	11	0	0	11	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0009	1502	7	4	3	0	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0010	1499	6	6	0	0	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0011	1502	3	0	1	0	0	2	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0012	1502	3	0	0	3	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0013	1502	3	3	0	0	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0014	1502	3	0	3	0	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0015	1502	2	2	0	0	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0016	1502	1	0	1	0	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0017	1502	1	0	0	0	0	1	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0018	1503	1	0	0	1	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0019	1502	1	0	0	1	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0020	1502	1	0	0	1	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0021	1502	1	0	0	0	0	1	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	t0022	1502	1	1	0	0	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G6_chr22_38106495_38186830	1/0	t0001	879	5	1	2	0	0	1	copy fasta	PLA2G6	chr22	38106495	38186830
PLA2G6_chr22_38106495_38186830	0/1	t0002	879	4	0	2	0	0	1	copy fasta	PLA2G6	chr22	38106495	38186830
PLA2G6_chr22_38106495_38186830	0/0	t0003	879	1	1	0	0	0	0	copy fasta	PLA2G6	chr22	38106495	38186830
PLA2G7_chr6_46699201_46740375	0/0	t0001	578	74	18	9	41	1	5	copy fasta	PLA2G7	chr6	46699201	46740375