JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLAAT5_chr11_63456404_63496167	0/0	t0002	2233	39	19	2	12	1	5	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0003	2233	30	0	7	20	0	3	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0004	2233	9	8	1	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0005	2233	9	9	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0006	2233	8	7	1	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0007	2230	4	4	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0008	2233	3	0	2	0	0	1	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0009	2233	3	0	2	1	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0010	2233	2	0	0	0	0	2	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0011	2233	2	0	0	2	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0012	2233	1	1	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0013	2233	1	0	0	1	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0014	2233	1	0	0	1	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0015	2233	1	1	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0016	2233	1	1	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0017	8338	1	0	0	1	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0018	2233	1	1	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0019	2233	1	0	0	0	1	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	t0020	2233	1	1	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAA_chr9_26898372_26952242	1/1	t0001	2337	295	49	64	128	14	38	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0002	2337	15	4	2	2	0	7	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0003	2337	13	4	3	0	3	3	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0004	2337	11	9	2	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0005	2331	9	0	2	5	1	1	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0006	2337	4	0	0	4	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0007	2337	4	4	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0008	2337	3	3	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0009	2335	2	2	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0010	2335	2	2	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0011	2337	2	2	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0012	2337	2	2	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0013	2337	2	2	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0014	2337	2	2	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0015	2337	1	1	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0016	2337	1	0	0	0	0	1	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0017	2337	1	0	0	1	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0018	2337	1	1	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0019	2335	1	1	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0020	2337	1	1	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0021	2337	1	1	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	t0022	2337	1	0	1	0	0	0	copy fasta	PLAA	chr9	26898372	26952242
PLAC1_chrX_134560838_134663471	0/0	t0001	481	140	59	33	35	3	10	copy fasta	PLAC1	chrX	134560838	134663471
PLAC1_chrX_134560838_134663471	1/1	t0002	481	112	7	20	55	8	20	copy fasta	PLAC1	chrX	134560838	134663471
PLAC8L1_chr5_146079313_146110577	1/0	t0001	1386	250	77	39	106	3	24	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/1	t0002	1386	88	0	22	50	3	12	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	t0003	1386	13	3	3	0	2	5	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	t0004	1386	6	6	0	0	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	t0005	1386	3	3	0	0	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	t0006	1386	2	0	2	0	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	t0007	1386	2	2	0	0	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577