Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACAP1_chr17_7331529_7356477	0/0	t0004	289	1	0	0	0	0	1	copy fasta	ACAP1	chr17	7331529	7356477
ACAP2_chr3_195269745_195448020	0/0	t0001	4756	86	8	9	55	3	11	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0002	4757	65	26	16	15	1	7	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	1/0	t0003	4757	35	1	11	12	4	6	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0004	4759	32	0	8	19	0	5	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0005	4758	27	2	5	12	2	6	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0006	4758	10	7	0	3	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0007	4757	6	6	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/1	t0008	4757	6	1	4	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0009	4757	5	5	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0010	4757	5	0	2	2	0	1	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0011	4758	5	5	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0012	4757	4	3	1	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0013	4757	3	3	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0014	4758	3	0	0	1	0	2	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0015	4760	3	0	1	2	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0016	4756	3	3	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0017	4756	3	3	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0018	4756	2	0	0	2	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0019	4758	2	0	2	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0020	4757	2	2	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0021	4757	1	0	0	1	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0022	4758	1	0	0	1	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0023	4757	1	1	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0024	4758	1	1	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0025	4759	1	0	0	0	0	1	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0026	4759	1	1	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0027	4757	1	1	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0028	4756	1	0	0	1	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0029	4757	1	0	0	1	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0030	4758	1	0	0	0	0	1	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0031	4757	1	0	0	1	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0032	4757	1	1	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0033	4756	1	1	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0034	4759	1	1	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0035	4759	1	0	1	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0036	4757	1	1	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP2_chr3_195269745_195448020	0/0	t0037	4757	1	1	0	0	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP3_chr1_1287391_1312930	1/0	t0001	1289	181	62	39	36	15	28	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	t0002	1289	73	12	7	42	1	11	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	t0003	1289	11	0	0	11	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	t0004	1289	9	0	0	9	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	t0005	1289	8	5	3	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	t0006	1290	5	4	0	1	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	t0007	1289	1	1	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	t0008	1289	1	0	1	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	t0009	1289	1	1	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	t0010	1289	1	0	0	0	0	1	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	t0011	1289	1	1	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	t0012	1289	1	0	0	1	0	0	copy fasta	ACAP3	chr1	1287391	1312930