Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATMIN_chr16_81030842_81052350	0/0	t0022	2412	3	0	0	3	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0023	2414	2	0	0	2	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0024	2418	2	0	0	1	0	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0025	2412	2	1	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0026	2425	2	0	0	2	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0027	2425	2	1	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0028	2419	2	0	0	2	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0029	2419	2	2	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0030	2412	2	0	0	2	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0031	2412	2	0	1	0	0	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0032	2415	2	2	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0033	2427	2	2	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0034	2412	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0035	2410	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0036	2413	1	0	1	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0037	2410	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0038	2417	1	0	1	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0039	2409	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0040	2415	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0041	2414	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0042	2410	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0043	2423	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0044	2421	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0045	2421	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0046	2412	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0047	2413	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0048	2415	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0049	2415	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0050	2415	1	0	1	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0051	2415	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0052	2412	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0053	2419	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0054	2404	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0055	2413	1	0	1	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	t0056	2404	1	1	0	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATM_chr11_108218067_108374102	0/1	t0001	3744	108	12	23	49	12	11	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	1/0	t0002	3745	84	21	18	33	1	10	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0003	3745	19	16	3	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0004	3745	10	9	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0005	3745	9	1	0	5	0	3	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0006	3746	5	0	1	3	0	1	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0007	3745	5	0	0	5	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0008	3745	5	5	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0009	3745	4	1	2	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0010	3744	4	3	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0011	3745	4	4	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0012	3745	4	3	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0013	3745	3	0	0	3	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0014	3744	3	0	1	0	0	2	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0015	3745	3	3	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102