JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLAC8L1_chr5_146079313_146110577	0/0	t0008	1386	1	1	0	0	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	t0009	1386	1	0	0	1	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	t0010	1386	1	0	0	1	0	0	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8L1_chr5_146079313_146110577	0/0	t0011	1386	1	0	0	0	0	1	copy fasta	PLAC8L1	chr5	146079313	146110577
PLAC8_chr4_83085048_83119729	0/0	t0001	1022	115	9	17	69	5	15	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/1	t0002	1020	99	15	9	65	3	6	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0003	1021	65	13	10	33	3	6	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0004	1015	30	14	5	1	4	6	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0005	1023	28	2	16	2	2	6	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	1/0	t0006	1027	13	6	3	0	0	3	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0007	1023	11	0	3	8	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0008	1015	10	9	1	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0009	1020	8	8	0	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0010	1028	4	0	2	0	1	1	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0011	1022	3	1	2	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0012	1019	3	3	0	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0013	1015	3	3	0	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0014	1020	2	2	0	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0015	1020	2	2	0	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0016	1024	2	0	1	1	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0017	1022	1	0	0	1	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0018	1027	1	1	0	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0019	1027	1	1	0	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0020	1020	1	1	0	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0021	1021	1	0	0	1	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0022	1021	1	1	0	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0023	1023	1	0	0	1	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0024	1022	1	0	1	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0025	1019	1	1	0	0	0	0	copy fasta	PLAC8	chr4	83085048	83119729
PLAC8_chr4_83085048_83119729	0/0	t0026	1017	1	0	0	0	0	1	copy fasta	PLAC8	chr4	83085048	83119729
PLAC9_chr10_80127730_80150359	1/1	t0001	483	460	92	83	217	16	50	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	t0002	483	2	2	0	0	0	0	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	t0003	483	1	0	1	0	0	0	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	t0004	483	1	0	0	1	0	0	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	t0005	483	1	0	0	1	0	0	copy fasta	PLAC9	chr10	80127730	80150359
PLAC9_chr10_80127730_80150359	0/0	t0006	483	1	0	0	1	0	0	copy fasta	PLAC9	chr10	80127730	80150359
PLAG1_chr8_56155909_56216273	1/0	t0001	5809	70	10	25	23	3	8	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0002	5810	49	21	6	13	0	9	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0003	5808	45	0	4	35	0	6	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0004	5811	23	3	1	14	1	4	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/1	t0005	5810	14	0	7	0	2	4	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0006	5809	13	0	0	13	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0007	5809	7	7	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0008	5808	6	3	1	0	2	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0009	5808	6	6	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0010	5815	6	0	2	4	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0011	5807	4	0	1	2	1	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0012	5812	4	3	1	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0013	5808	3	0	0	3	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0014	5810	3	0	0	2	0	1	copy fasta	PLAG1	chr8	56155909	56216273