JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLAG1_chr8_56155909_56216273	0/0	t0015	5810	3	3	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0016	5808	3	1	1	0	1	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0017	5815	3	3	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0018	5811	2	1	1	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0019	5798	2	0	0	2	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0020	5813	2	2	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0021	5815	2	2	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0022	5810	1	1	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0023	5809	1	0	0	0	1	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0024	5809	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0025	5808	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0026	5807	1	0	1	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0027	5807	1	0	1	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0028	5808	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0029	5807	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0030	5812	1	1	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0031	5812	1	1	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0032	5809	1	0	0	0	0	1	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0033	5810	1	1	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0034	5810	1	0	1	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0035	5809	1	0	1	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0036	5810	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0037	5810	1	0	1	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0038	5812	1	0	0	0	0	1	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0039	5811	1	0	1	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0040	5809	1	0	1	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0041	5812	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0042	5811	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0043	5811	1	1	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0044	5811	1	1	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0045	5811	1	0	1	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0046	5810	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0047	5809	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0048	5809	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0049	5808	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0050	5811	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0051	5809	1	0	0	0	1	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0052	5811	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0053	5810	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0054	5811	1	0	0	1	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0055	5814	1	1	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0056	5814	1	1	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0057	5809	1	1	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0058	5796	1	1	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAG1_chr8_56155909_56216273	0/0	t0059	5809	1	1	0	0	0	0	copy fasta	PLAG1	chr8	56155909	56216273
PLAGL1_chr6_143935300_144013259	0/1	t0001	1879	123	22	30	43	4	23	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	1/0	t0002	1878	122	47	23	41	6	4	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0003	1879	85	0	8	73	0	4	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0004	1879	43	10	11	15	2	5	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0005	1879	10	10	0	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259