JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLAGL1_chr6_143935300_144013259	0/0	t0006	1878	1	0	1	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0007	1878	1	0	0	1	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0008	1879	1	0	1	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0009	1879	1	0	0	0	1	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0010	1878	1	1	0	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0011	1879	1	0	1	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0012	1878	1	1	0	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0013	1878	1	1	0	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0014	1879	1	0	0	1	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0015	1878	1	0	0	0	1	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL1_chr6_143935300_144013259	0/0	t0016	1879	1	0	1	0	0	0	copy fasta	PLAGL1	chr6	143935300	144013259
PLAGL2_chr20_32187504_32212743	0/1	t0001	4166	151	20	19	92	6	13	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0002	4166	97	27	23	43	1	3	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	1/0	t0003	4166	46	5	19	1	5	15	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0004	4166	16	15	1	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0005	4166	8	7	1	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0006	4166	6	6	0	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0007	4166	5	0	5	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0008	4166	3	0	3	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0009	4166	3	3	0	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0010	4166	2	0	2	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0011	4166	2	2	0	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0012	4166	1	1	0	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0013	4166	1	0	1	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0014	4166	1	0	0	1	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0015	4166	1	0	0	0	0	1	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0016	4166	1	1	0	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0017	4166	1	0	0	1	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0018	4166	1	0	0	1	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0019	4166	1	0	0	1	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAGL2_chr20_32187504_32212743	0/0	t0020	4166	1	1	0	0	0	0	copy fasta	PLAGL2	chr20	32187504	32212743
PLAT_chr8_42169718_42212565	1/1	t0001	1374	306	74	56	126	14	34	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	t0002	1374	54	2	8	38	2	4	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	t0003	1374	6	6	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	t0004	1374	6	6	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	t0005	1374	2	0	2	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	t0006	1374	1	0	0	1	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	t0007	1374	1	1	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	t0008	1374	1	0	0	1	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAT_chr8_42169718_42212565	0/0	t0009	1374	1	1	0	0	0	0	copy fasta	PLAT	chr8	42169718	42212565
PLAUR_chr19_43643579_43675169	1/1	t0001	361	345	65	72	151	15	40	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	t0002	361	78	32	4	35	1	6	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	t0003	361	12	0	6	6	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	t0004	361	2	2	0	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	t0005	361	2	0	0	2	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	t0006	361	1	0	0	1	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	t0007	361	1	1	0	0	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAUR_chr19_43643579_43675169	0/0	t0008	361	1	0	0	1	0	0	copy fasta	PLAUR	chr19	43643579	43675169
PLAU_chr10_73906132_73922494	1/1	t0001	1048	293	51	44	164	5	27	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	t0002	1047	114	37	38	18	6	15	copy fasta	PLAU	chr10	73906132	73922494