JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLAU_chr10_73906132_73922494	0/0	t0003	1047	12	0	0	12	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	t0004	1048	3	1	0	0	0	2	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	t0005	1048	2	2	0	0	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	t0006	1048	1	1	0	0	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	t0007	1048	1	0	0	1	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	t0008	1048	1	0	0	1	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	t0009	1048	1	1	0	0	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	t0010	1047	1	0	0	0	1	0	copy fasta	PLAU	chr10	73906132	73922494
PLAU_chr10_73906132_73922494	0/0	t0011	1047	1	1	0	0	0	0	copy fasta	PLAU	chr10	73906132	73922494
PLB1_chr2_28491060_28649142	1/1	t0001	1137	144	28	43	44	9	18	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0002	1137	80	20	15	28	5	12	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0003	1137	15	13	2	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0004	1137	11	10	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0005	1137	3	0	0	0	0	3	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0006	1137	2	0	2	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0007	1137	2	2	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0008	1137	2	2	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0009	1137	1	0	0	1	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0010	1137	1	0	0	1	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0011	1137	1	0	0	0	0	1	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0012	1137	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0013	1137	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0014	1137	1	1	0	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLB1_chr2_28491060_28649142	0/0	t0015	1137	1	0	1	0	0	0	copy fasta	PLB1	chr2	28491060	28649142
PLBD1_chr12_14498661_14572883	1/1	t0001	299	348	85	68	143	14	36	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	t0002	299	7	7	0	0	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD1_chr12_14498661_14572883	0/0	t0003	294	5	0	4	1	0	0	copy fasta	PLBD1	chr12	14498661	14572883
PLBD2_chr12_113353587_113396629	1/0	t0001	3018	153	50	36	45	5	16	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0002	3018	27	0	0	24	0	3	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0003	3018	21	1	3	16	0	1	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0004	3018	8	0	8	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0005	3018	7	1	4	0	2	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0006	3018	7	0	0	7	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0007	3018	7	0	3	0	1	3	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0008	3018	4	4	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0009	3018	4	0	1	2	0	1	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0010	3022	3	3	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0011	3018	3	1	2	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0012	3018	2	0	0	0	0	2	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0013	3019	2	2	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0014	3019	2	2	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0015	3019	2	1	1	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0016	3018	2	0	0	2	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0017	3019	2	2	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0018	3019	2	2	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0019	3018	2	0	0	0	0	2	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0020	3019	2	2	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0021	3018	2	2	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0022	3018	1	1	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0023	3008	1	0	1	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629