JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLBD2_chr12_113353587_113396629	0/0	t0024	3018	1	0	0	0	0	1	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0025	3018	1	0	1	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0026	3018	1	0	0	0	0	1	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0027	3018	1	1	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0028	3018	1	1	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0029	3018	1	1	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0030	3006	1	0	0	1	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0031	3018	1	0	0	1	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0032	3018	1	0	1	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0033	3023	1	1	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/0	t0034	3019	1	0	1	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLBD2_chr12_113353587_113396629	0/1	t0035	3018	1	0	0	0	0	0	copy fasta	PLBD2	chr12	113353587	113396629
PLCB1_chr20_8127266_8889900	0/0	t0001	3438	32	19	5	7	1	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0002	3438	18	8	3	6	0	1	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0003	3434	14	7	2	2	1	2	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0004	3438	7	3	1	1	0	2	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0005	3438	5	0	4	0	1	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0006	3438	5	4	1	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0007	3441	4	4	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0008	3438	3	0	2	0	0	1	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0009	3431	3	1	2	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0010	3438	2	1	1	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0011	3438	2	2	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0012	3438	2	2	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0013	3434	1	0	1	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0014	3438	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0015	3441	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0016	3438	1	0	1	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0017	3438	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0018	3438	1	0	0	0	1	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0019	3438	1	0	1	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0020	3438	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB1_chr20_8127266_8889900	0/0	t0021	3441	1	1	0	0	0	0	copy fasta	PLCB1	chr20	8127266	8889900
PLCB2_chr15_40282909_40312935	1/1	t0001	1070	340	68	62	165	16	27	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	t0002	1070	16	14	1	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	t0003	1070	9	0	0	0	0	9	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	t0004	1070	7	6	1	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	t0005	1070	4	4	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	t0006	1070	3	0	0	0	0	3	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	t0007	1070	2	0	0	0	0	2	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	t0008	1070	2	1	1	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	t0009	1070	1	1	0	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	t0010	1070	1	0	0	0	0	1	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	t0011	1070	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	t0012	1070	1	0	0	1	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB2_chr15_40282909_40312935	0/0	t0013	1070	1	0	1	0	0	0	copy fasta	PLCB2	chr15	40282909	40312935
PLCB3_chr11_64246530_64272923	1/1	t0001	488	300	75	47	128	15	33	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	t0002	484	58	7	27	22	1	1	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	t0003	487	15	9	1	3	0	2	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	t0004	487	7	6	1	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923