JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLCB3_chr11_64246530_64272923	0/0	t0005	484	1	1	0	0	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB3_chr11_64246530_64272923	0/0	t0006	488	1	0	0	1	0	0	copy fasta	PLCB3	chr11	64246530	64272923
PLCB4_chr20_9064087_9485808	0/1	t0001	2054	90	46	19	12	1	11	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	t0002	2054	17	4	3	5	0	5	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	t0003	2054	12	6	1	4	1	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	t0004	2054	9	1	2	5	0	1	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	1/0	t0005	2054	3	0	1	0	1	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	t0006	2054	3	0	2	0	0	1	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	t0007	2054	1	0	0	0	1	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	t0008	2054	1	1	0	0	0	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	t0009	2054	1	0	0	1	0	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	t0010	2054	1	0	0	1	0	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	t0011	2054	1	1	0	0	0	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCB4_chr20_9064087_9485808	0/0	t0012	2054	1	1	0	0	0	0	copy fasta	PLCB4	chr20	9064087	9485808
PLCD1_chr3_38002496_38034642	1/1	t0001	381	291	56	57	140	10	26	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	t0002	380	68	35	12	7	2	12	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	t0003	381	1	1	0	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	t0004	381	1	0	0	1	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD1_chr3_38002496_38034642	0/0	t0005	381	1	0	1	0	0	0	copy fasta	PLCD1	chr3	38002496	38034642
PLCD3_chr17_45103959_45137515	0/0	t0001	3762	42	27	6	5	2	2	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/1	t0002	3764	41	3	8	16	3	10	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0003	3764	33	0	4	29	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0004	3764	24	0	5	17	0	2	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0005	3764	18	0	0	15	0	3	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0006	3763	16	0	9	3	1	3	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0007	3775	16	2	3	6	0	5	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0008	3764	13	0	3	10	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0009	3775	11	0	0	11	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0010	3766	11	8	2	0	0	1	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0011	3763	7	0	4	0	2	1	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0012	3771	7	7	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0013	3765	7	0	2	2	2	1	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0014	3762	7	0	4	0	0	3	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0015	3764	7	0	0	6	0	1	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0016	3762	6	6	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0017	3766	6	0	1	5	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	1/0	t0018	3763	5	0	1	0	3	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0019	3760	5	5	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0020	3762	5	0	0	4	0	1	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0021	3766	4	0	0	4	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0022	3771	4	0	4	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0023	3764	3	3	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0024	3768	3	1	0	2	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0025	3764	3	3	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0026	3765	3	0	3	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0027	3767	3	3	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0028	3763	3	0	1	0	0	2	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0029	3766	3	0	2	0	0	1	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0030	3764	3	1	0	0	1	1	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0031	3765	3	0	0	3	0	0	copy fasta	PLCD3	chr17	45103959	45137515