JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLCD3_chr17_45103959_45137515	0/0	t0082	3766	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0083	3765	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0084	3765	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0085	3765	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0086	3770	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0087	3776	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0088	3763	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0089	3764	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0090	3764	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0091	3764	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0092	3764	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0093	3765	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0094	3765	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0095	3769	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0096	3767	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0097	3768	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0098	3779	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0099	3775	1	0	1	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0100	3775	1	0	1	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0101	3773	1	0	0	0	1	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0102	3769	1	1	0	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0103	3765	1	0	1	0	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0104	3764	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0105	3775	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0106	3764	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0107	3764	1	0	0	0	0	1	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0108	3766	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0109	3765	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0110	3765	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0111	3766	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0112	3764	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0113	3765	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0114	3765	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0115	3766	1	0	0	1	0	0	copy fasta	PLCD3	chr17	45103959	45137515
PLCD3_chr17_45103959_45137515	0/0	t0116	3763	1	0	0	0	0	1	copy fasta	PLCD3	chr17	45103959	45137515
PLCD4_chr2_218602899_218642175	0/1	t0001	804	112	4	32	56	4	15	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	1/0	t0002	804	112	76	3	28	0	4	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	t0003	804	54	1	20	15	4	14	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	t0004	804	12	12	0	0	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	t0005	804	4	0	0	4	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	t0006	804	2	1	0	0	0	1	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	t0007	804	1	0	1	0	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCD4_chr2_218602899_218642175	0/0	t0008	804	1	0	0	1	0	0	copy fasta	PLCD4	chr2	218602899	218642175
PLCE1_chr10_93988931_94337823	0/0	t0001	5548	4	0	1	2	1	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0002	5570	3	3	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0003	5534	3	0	1	2	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0004	5571	2	1	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0005	5570	2	0	1	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0006	5573	2	0	1	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0007	5570	2	2	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823