JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLCE1_chr10_93988931_94337823	0/0	t0008	5571	2	1	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0009	5548	2	0	0	2	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0010	5565	2	1	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0011	5554	2	2	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0012	5545	2	2	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0013	5558	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0014	5589	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0015	5579	1	0	0	0	1	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0016	5569	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0017	5565	1	0	0	0	1	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0018	5548	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0019	5558	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0020	5536	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0021	5532	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0022	5557	1	0	0	0	1	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0023	5581	1	0	0	0	1	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0024	5579	1	0	0	0	1	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/1	t0025	5577	1	0	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0026	5574	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0027	5573	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0028	5570	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0029	5573	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0030	5927	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0031	5570	1	0	0	0	0	1	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0032	5568	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	1/0	t0033	5573	1	0	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0034	5569	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0035	5566	1	0	0	0	0	1	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0036	5566	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0037	5556	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0038	5554	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0039	5555	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0040	5565	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0041	5571	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0042	5572	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0043	5552	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0044	5554	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0045	5559	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0046	5592	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0047	5567	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0048	5579	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0049	5577	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0050	5572	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0051	5579	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0052	5579	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0053	5572	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0054	5570	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0055	5568	1	0	0	0	0	1	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0056	5571	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0057	5574	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823