JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLCE1_chr10_93988931_94337823	0/0	t0058	5567	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0059	5559	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0060	5570	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0061	5568	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0062	5569	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0063	5556	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0064	5570	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0065	5569	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0066	5554	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0067	5574	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0068	5567	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0069	5595	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0070	5584	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0071	5572	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0072	5568	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0073	5568	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0074	5567	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0075	5571	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0076	5570	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0077	5568	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0078	5568	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0079	5566	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0080	5555	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0081	5562	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0082	5548	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0083	5568	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0084	5569	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0085	5545	1	0	0	0	0	1	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0086	5551	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0087	5554	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0088	5562	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0089	5537	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0090	5568	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0091	5559	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0092	5558	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0093	5559	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0094	5557	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0095	5555	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0096	5558	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0097	5556	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0098	5554	1	0	0	1	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0099	5554	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0100	5557	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0101	5555	1	1	0	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCE1_chr10_93988931_94337823	0/0	t0102	5554	1	0	1	0	0	0	copy fasta	PLCE1	chr10	93988931	94337823
PLCG1_chr20_41132543_41182626	1/0	t0001	3217	283	38	52	160	10	22	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0002	3225	26	9	10	1	3	3	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0003	3217	20	16	4	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/1	t0004	3221	20	4	4	4	3	4	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0005	3221	7	0	0	7	0	0	copy fasta	PLCG1	chr20	41132543	41182626