Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATM_chr11_108218067_108374102	0/0	t0016	3744	3	2	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0017	3744	3	0	0	3	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0018	3745	2	0	0	1	0	1	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0019	3744	2	0	0	2	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0020	3745	2	0	0	2	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0021	3746	2	0	0	2	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0022	3745	2	2	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0023	3744	2	1	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0024	3745	2	0	0	2	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0025	3745	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0026	3744	1	0	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0027	3744	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0028	3744	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0029	3746	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0030	3746	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0031	3745	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0032	3745	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0033	3746	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0034	3745	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0035	3744	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0036	3745	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0037	3744	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	t0038	3744	1	0	0	0	1	0	copy fasta	ATM	chr11	108218067	108374102
ATN1_chr12_6922959_6947321	1/1	t0001	1130	373	77	62	177	13	42	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	t0002	1130	9	0	3	0	0	6	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	t0003	1130	8	0	0	8	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	t0004	1130	7	7	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	t0005	1130	6	6	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	t0006	1130	4	0	0	3	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	t0007	1130	2	0	1	0	1	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	t0008	1112	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	t0009	1130	1	0	0	0	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	t0010	1130	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	t0011	1130	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	t0012	1130	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATOH1_chr4_93823753_93835964	1/1	t0001	1148	177	23	21	102	8	21	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0002	1149	123	14	29	59	7	14	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0003	1149	48	3	8	31	1	5	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0004	1149	47	7	20	16	2	2	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0005	1148	16	15	1	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0006	1148	16	11	4	0	0	1	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0007	1149	9	9	0	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0008	1149	4	4	0	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0009	1148	4	0	0	4	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0010	1150	2	2	0	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0011	1148	1	1	0	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0012	1148	1	1	0	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0013	1149	1	0	0	0	0	1	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0014	1148	1	1	0	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0015	1149	1	0	0	1	0	0	copy fasta	ATOH1	chr4	93823753	93835964