JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLCG1_chr20_41132543_41182626	0/0	t0006	3217	7	7	0	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0007	3219	5	5	0	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0008	3221	5	0	3	0	0	2	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0009	3221	3	3	0	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0010	3217	2	0	1	0	0	1	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0011	3217	1	1	0	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0012	3217	1	1	0	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0013	3225	1	1	0	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0014	3191	1	1	0	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0015	3217	1	1	0	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0016	3217	1	0	0	0	0	1	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0017	3217	1	0	0	0	0	1	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0018	3221	1	0	0	1	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0019	3221	1	1	0	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0020	3217	1	1	0	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0021	3221	1	1	0	0	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG1_chr20_41132543_41182626	0/0	t0022	3217	1	0	0	1	0	0	copy fasta	PLCG1	chr20	41132543	41182626
PLCG2_chr16_81774291_81967685	0/0	t0001	4857	47	1	10	25	2	9	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0002	4857	40	1	7	27	1	4	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/1	t0003	4857	30	3	14	1	5	6	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0004	4857	22	2	6	12	0	2	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0005	4869	19	15	4	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0006	4869	17	0	8	8	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0007	4857	17	9	1	2	2	3	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0008	4869	10	5	0	2	0	3	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0009	4857	8	8	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0010	4857	6	0	4	0	0	2	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0011	4869	6	2	2	1	1	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0012	4869	5	5	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0013	4869	5	5	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0014	4870	4	4	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0015	4869	4	0	0	4	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0016	4857	3	1	2	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	1/0	t0017	4869	3	1	1	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0018	4869	3	3	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0019	4857	3	0	2	0	1	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0020	4869	3	0	1	2	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0021	4870	3	1	1	0	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0022	4869	2	2	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0023	4870	2	2	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0024	4857	2	0	0	1	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0025	4869	2	2	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0026	4857	2	0	0	1	1	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0027	4857	2	0	0	1	0	1	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0028	4857	2	0	0	2	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0029	4869	2	0	2	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0030	4869	2	0	0	2	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0031	4869	2	2	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0032	4869	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685
PLCG2_chr16_81774291_81967685	0/0	t0033	4869	1	1	0	0	0	0	copy fasta	PLCG2	chr16	81774291	81967685