JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLCH1_chr3_155474881_155750071	1/1	t0001	1360	234	70	46	81	4	31	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	t0002	1361	14	0	2	9	2	1	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	t0003	1359	7	7	0	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	t0004	1356	5	5	0	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	t0005	1360	1	1	0	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	t0006	1361	1	0	0	1	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	t0007	1360	1	1	0	0	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH1_chr3_155474881_155750071	0/0	t0008	1360	1	0	0	1	0	0	copy fasta	PLCH1	chr3	155474881	155750071
PLCH2_chr1_2471289_2510532	0/1	t0001	620	203	35	38	91	10	28	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	t0002	620	159	52	21	72	3	11	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	t0003	620	10	1	8	0	1	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	t0004	620	3	3	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	t0005	620	2	0	0	2	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	t0006	620	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	t0007	620	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	t0008	620	1	1	0	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	t0009	620	1	0	0	1	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	t0010	620	1	0	0	0	0	1	copy fasta	PLCH2	chr1	2471289	2510532
PLCH2_chr1_2471289_2510532	0/0	t0011	620	1	0	1	0	0	0	copy fasta	PLCH2	chr1	2471289	2510532
PLCL1_chr2_197799593_198154863	0/0	t0001	3415	27	10	7	8	1	1	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0002	3423	21	0	2	19	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0003	3419	15	2	1	12	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0004	3419	14	0	1	11	0	2	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0005	3413	13	7	3	1	0	2	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0006	3421	12	2	4	4	2	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0007	3415	9	1	3	5	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0008	3421	6	0	1	3	0	2	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0009	3411	5	5	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0010	3407	5	5	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0011	3417	5	2	1	2	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0012	3421	5	0	3	1	0	1	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0013	3417	4	2	1	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0014	3417	4	0	1	2	0	1	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0015	3423	4	0	2	2	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0016	3407	3	3	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0017	3413	3	1	1	0	0	1	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0018	3417	3	0	0	3	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0019	3425	3	0	0	3	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0020	3419	3	3	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0021	3409	2	0	1	0	1	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0022	3419	2	0	2	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0023	3415	2	0	0	1	1	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0024	3419	2	0	0	2	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0025	3418	2	2	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0026	3417	2	1	0	0	0	1	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0027	3425	2	0	0	1	1	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0028	3415	1	1	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0029	3409	1	1	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0030	3415	1	1	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0031	3415	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863