JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLCL1_chr2_197799593_198154863	0/0	t0032	3425	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0033	3419	1	0	1	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0034	3409	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0035	3409	1	1	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0036	3417	1	0	1	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0037	3419	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0038	3419	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0039	3419	1	0	0	0	0	1	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0040	3421	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0041	3423	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0042	3423	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0043	3410	1	1	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0044	3415	1	1	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0045	3415	1	0	1	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0046	3421	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0047	3423	1	1	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0048	3425	1	0	1	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0049	3427	1	0	0	0	0	1	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0050	3429	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0051	3419	1	1	0	0	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0052	3429	1	0	0	1	0	0	copy fasta	PLCL1	chr2	197799593	198154863
PLCL1_chr2_197799593_198154863	0/0	t0053	3415	1	0	0	0	0	1	copy fasta	PLCL1	chr2	197799593	198154863
PLCL2_chr3_16879955_17095604	1/1	t0001	778	206	65	42	62	6	29	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	t0002	778	29	15	4	6	2	2	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	t0003	778	8	0	3	0	2	3	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	t0004	778	5	5	0	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	t0005	778	1	0	1	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCL2_chr3_16879955_17095604	0/0	t0006	778	1	1	0	0	0	0	copy fasta	PLCL2	chr3	16879955	17095604
PLCXD1_chrX_276381_308356	0/0	t0001	4349	13	0	5	6	2	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0002	4337	12	0	3	7	0	2	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0003	4349	6	0	0	6	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0004	4337	5	0	1	4	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0005	4349	5	0	0	5	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0006	4331	4	4	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0007	4335	4	0	0	4	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0008	4337	4	0	4	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0009	4349	3	0	2	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0010	4337	3	0	1	2	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0011	4340	2	2	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0012	4327	2	2	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0013	4346	2	0	0	2	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0014	4349	2	0	0	0	1	1	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0015	4340	2	2	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0016	4344	2	0	1	0	0	1	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0017	4331	2	2	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0018	4305	2	2	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0019	4335	2	0	0	2	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0020	4338	2	0	2	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0021	4338	2	0	0	1	0	1	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0022	4336	2	0	2	0	0	0	copy fasta	PLCXD1	chrX	276381	308356