JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	tseq	genename	chr	start	end
PLCXD1_chrX_276381_308356	0/0	t0023	4334	2	2	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0024	4334	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0025	4334	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0026	4337	1	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0027	4329	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0028	4349	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0029	4350	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0030	4337	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0031	4350	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0032	4336	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0033	4335	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0034	4340	1	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0035	4337	1	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0036	4337	1	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0037	4337	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0038	4334	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0039	4347	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0040	4336	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0041	4336	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0042	4333	1	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0043	4344	1	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0044	4342	1	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0045	4335	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0046	4337	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0047	4338	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0048	4330	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0049	4338	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0050	4339	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0051	4333	1	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0052	4333	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0053	4331	1	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0054	4331	1	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0055	4331	1	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0056	4331	1	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0057	4352	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0058	4331	1	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0059	4338	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0060	4336	1	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0061	4349	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0062	4349	1	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0063	4350	1	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/1	t0064	4349	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0065	4350	1	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0066	4351	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0067	4351	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0068	4347	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0069	4349	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0070	4341	1	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0071	4332	1	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0072	4348	1	0	0	0	1	copy fasta	PLCXD1	chrX	276381	308356