JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLCXD1_chrX_276381_308356	0/0	t0073	4350	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0074	4337	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0075	4335	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0076	4335	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0077	4335	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0078	4350	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0079	4338	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0080	4337	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0081	4335	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0082	4335	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0083	4333	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0084	4344	1	0	0	0	0	1	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0085	4434	1	0	0	0	0	1	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0086	4332	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0087	4331	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0088	4342	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0089	4343	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0090	4343	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0091	4336	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0092	4339	1	0	0	0	0	1	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0093	4339	1	0	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0094	4336	1	0	0	0	0	1	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0095	4334	1	0	0	0	1	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	1/0	t0096	4347	1	0	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0097	4337	1	0	0	0	0	1	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0098	4337	1	0	0	0	0	1	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0099	4338	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0100	4337	1	0	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0101	4334	1	0	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0102	4336	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0103	4349	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0104	4333	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0105	4351	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0106	4335	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0107	4331	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0108	4334	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0109	4350	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0110	4338	1	0	1	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0111	4350	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0112	4348	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0113	4339	1	0	0	1	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD1_chrX_276381_308356	0/0	t0114	4343	1	1	0	0	0	0	copy fasta	PLCXD1	chrX	276381	308356
PLCXD2_chr3_111669676_111732007	0/0	t0001	6713	77	3	18	44	4	8	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0002	6701	64	0	12	41	2	9	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/1	t0003	6705	47	33	7	1	1	4	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0004	6701	37	15	7	6	2	7	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0005	6704	12	0	1	10	0	1	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0006	6717	12	0	5	6	1	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	1/0	t0007	6696	8	2	4	0	0	1	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0008	6705	6	6	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007