JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLCXD2_chr3_111669676_111732007	0/0	t0009	6713	5	0	0	0	0	5	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0010	6713	4	0	0	4	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0011	6701	3	0	2	0	1	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0012	6709	3	3	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0013	6709	3	0	3	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0014	6705	2	2	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0015	6705	2	2	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0016	6709	2	2	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0017	6713	2	2	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0018	6713	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0019	6696	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0020	6705	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0021	6700	1	0	0	1	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0022	6700	1	0	0	1	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0023	6701	1	0	1	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0024	6701	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0025	6701	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0026	6705	1	0	0	0	1	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0027	6705	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0028	6705	1	0	1	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0029	6705	1	0	1	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0030	6705	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0031	6705	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0032	6705	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0033	6709	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0034	6709	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0035	6709	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0036	6713	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0037	6713	1	0	0	1	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0038	6713	1	1	0	0	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0039	6713	1	0	0	0	0	1	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0040	6713	1	0	0	0	1	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0041	6701	1	0	0	1	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0042	6701	1	0	0	1	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0043	6701	1	0	0	1	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0044	6713	1	0	0	1	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0045	6713	1	0	0	0	0	1	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0046	6713	1	0	0	1	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0047	6713	1	0	0	1	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0048	6713	1	0	0	0	1	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0049	6713	1	0	0	0	0	1	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0050	6701	1	0	0	1	0	0	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0051	6701	1	0	0	0	0	1	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD2_chr3_111669676_111732007	0/0	t0052	6701	1	0	0	0	0	1	copy fasta	PLCXD2	chr3	111669676	111732007
PLCXD3_chr5_41301952_41515601	0/0	t0001	6733	28	1	5	21	1	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0002	6745	20	3	8	8	0	1	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0003	6749	20	3	3	13	0	1	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0004	6753	17	4	6	5	0	2	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	1/0	t0005	6741	16	2	1	11	1	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0006	6737	11	0	1	10	0	0	copy fasta	PLCXD3	chr5	41301952	41515601