JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLCXD3_chr5_41301952_41515601	0/0	t0007	6733	8	5	1	0	2	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0008	6741	8	6	1	0	1	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0009	6745	7	5	2	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0010	6725	5	5	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0011	6749	5	2	2	0	0	1	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0012	6742	4	4	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0013	6742	4	4	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0014	6729	4	0	1	1	1	1	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0015	6738	3	3	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0016	6738	3	3	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0017	6738	3	3	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/1	t0018	6737	3	0	1	1	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0019	6737	3	2	0	0	0	1	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0020	6757	3	1	0	2	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0021	6737	2	1	1	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0022	6737	2	2	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0023	6753	2	2	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0024	6738	2	0	2	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0025	6726	2	2	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0026	6737	2	1	0	0	1	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0027	6742	2	2	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0028	6737	2	2	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0029	6745	2	0	2	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0030	6753	2	0	1	1	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0031	6753	2	0	2	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0032	6757	2	0	0	2	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0033	6750	2	2	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0034	6741	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0035	6741	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0036	6746	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0037	6749	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0038	6749	1	0	0	0	1	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0039	6753	1	0	0	0	0	1	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0040	6741	1	0	1	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0041	6729	1	0	0	0	1	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0042	6734	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0043	6733	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0044	6738	1	0	1	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0045	6733	1	0	0	0	0	1	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0046	6738	1	0	1	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0047	6742	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0048	6742	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0049	6741	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0050	6741	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0051	6746	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0052	6741	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0053	6745	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0054	6745	1	0	0	0	0	1	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0055	6745	1	0	0	0	0	1	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0056	6745	1	0	1	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601