JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLCXD3_chr5_41301952_41515601	0/0	t0057	6745	1	0	1	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0058	6750	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0059	6745	1	0	0	1	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0060	6750	1	0	0	0	0	1	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0061	6749	1	0	0	1	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0062	6749	1	0	1	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0063	6749	1	0	1	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0064	6749	1	0	1	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0065	6749	1	0	0	1	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0066	6749	1	0	0	1	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0067	6749	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0068	6753	1	1	0	0	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0069	6753	1	0	0	0	0	1	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0070	6753	1	0	0	1	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0071	6757	1	0	0	1	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0072	6749	1	0	0	0	0	1	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0073	6753	1	0	0	0	1	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0074	6737	1	0	0	1	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0075	6741	1	0	0	1	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCXD3_chr5_41301952_41515601	0/0	t0076	6753	1	0	0	1	0	0	copy fasta	PLCXD3	chr5	41301952	41515601
PLCZ1_chr12_18678180_18743012	1/1	t0001	279	317	84	55	130	16	30	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	t0002	279	4	4	0	0	0	0	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	t0003	279	4	4	0	0	0	0	copy fasta	PLCZ1	chr12	18678180	18743012
PLCZ1_chr12_18678180_18743012	0/0	t0004	279	1	0	1	0	0	0	copy fasta	PLCZ1	chr12	18678180	18743012
PLD1_chr3_171595404_171815483	1/1	t0001	2791	110	16	24	48	3	17	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0002	2792	60	17	14	23	4	2	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0003	2786	39	9	6	14	2	8	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0004	2791	18	11	2	2	1	2	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0005	2787	9	2	0	7	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0006	2792	9	2	1	3	0	3	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0007	2791	8	8	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0008	2792	8	0	3	5	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0009	2790	4	0	1	3	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0010	3120	4	4	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0011	2790	3	3	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0012	3118	3	3	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0013	2790	2	1	0	0	0	1	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0014	3119	2	2	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0015	2786	1	0	0	1	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0016	2791	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0017	2792	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0018	2791	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0019	2791	1	0	1	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0020	2786	1	0	0	0	0	1	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0021	2786	1	0	0	1	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0022	2792	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0023	2791	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0024	2791	1	0	0	1	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0025	2791	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0026	3107	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483