JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLD1_chr3_171595404_171815483	0/0	t0027	3121	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0028	2787	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD1_chr3_171595404_171815483	0/0	t0029	3120	1	1	0	0	0	0	copy fasta	PLD1	chr3	171595404	171815483
PLD2_chr17_4802152_4828430	0/1	t0001	641	413	90	76	190	13	43	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	1/0	t0002	641	30	5	5	12	3	4	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	t0003	641	2	1	1	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	t0004	641	1	0	0	0	0	1	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	t0005	641	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	t0006	641	1	0	0	0	0	1	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	t0007	641	1	1	0	0	0	0	copy fasta	PLD2	chr17	4802152	4828430
PLD2_chr17_4802152_4828430	0/0	t0008	641	1	0	0	0	0	1	copy fasta	PLD2	chr17	4802152	4828430
PLD3_chr19_40343695_40383485	0/1	t0001	665	151	25	35	71	10	9	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0002	665	131	50	25	37	6	13	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0003	665	36	4	6	22	1	3	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0004	665	11	4	0	7	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	1/0	t0005	665	11	4	1	1	1	3	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0006	665	7	6	1	0	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0007	665	4	4	0	0	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0008	665	3	3	0	0	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0009	665	3	0	0	3	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0010	665	2	0	0	2	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0011	665	1	0	0	0	0	1	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0012	665	1	0	0	1	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0013	665	1	0	0	1	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0014	665	1	0	0	0	0	1	copy fasta	PLD3	chr19	40343695	40383485
PLD3_chr19_40343695_40383485	0/0	t0015	665	1	0	0	1	0	0	copy fasta	PLD3	chr19	40343695	40383485
PLD4_chr14_104919879_104938236	1/1	t0001	385	417	84	80	189	12	50	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	t0002	385	4	4	0	0	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	t0003	385	2	2	0	0	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	t0004	385	2	0	0	2	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD4_chr14_104919879_104938236	0/0	t0005	385	1	0	0	1	0	0	copy fasta	PLD4	chr14	104919879	104938236
PLD5_chr1_242077986_242529697	1/1	t0001	7290	33	8	8	12	0	3	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0002	7291	15	0	5	10	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0003	7290	12	6	3	0	0	3	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0004	7290	7	1	2	4	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0005	7287	6	2	2	1	0	1	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0006	7289	6	0	3	2	0	1	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0007	7290	5	1	3	0	0	1	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0008	7288	4	4	0	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0009	7290	4	0	0	3	0	1	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0010	7291	3	0	0	3	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0011	7289	3	0	1	0	1	1	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0012	7291	3	1	0	1	0	1	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0013	7289	3	0	0	1	1	1	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0014	7290	3	3	0	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0015	7288	2	2	0	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0016	7288	2	0	2	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0017	7289	2	0	0	2	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0018	7289	2	0	1	1	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0019	7291	2	0	0	2	0	0	copy fasta	PLD5	chr1	242077986	242529697