Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATOH1_chr4_93823753_93835964	0/0	t0016	1150	1	0	1	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0017	1148	1	1	0	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0018	1149	1	0	0	0	0	1	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0019	1148	1	0	0	1	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0020	1149	1	0	0	1	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0021	1150	1	0	0	0	0	1	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	t0022	1148	1	0	0	1	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH7_chr10_68225595_68237113	0/1	t0001	1061	192	14	40	98	13	26	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	1/0	t0002	1061	104	50	8	35	2	8	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	0/0	t0003	1061	55	4	17	25	3	6	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	0/0	t0004	1061	26	22	4	0	0	0	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	0/0	t0005	1061	3	2	1	0	0	0	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	0/0	t0006	1061	2	2	0	0	0	0	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	0/0	t0007	1061	1	0	0	1	0	0	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	0/0	t0008	1061	1	0	0	1	0	0	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	0/0	t0009	1061	1	1	0	0	0	0	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	0/0	t0010	1061	1	1	0	0	0	0	copy fasta	ATOH7	chr10	68225595	68237113
ATOH8_chr2_85748991_85796383	1/0	t0001	4693	163	24	22	93	8	15	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0002	4691	42	20	12	0	4	6	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0003	4691	30	2	0	19	0	9	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0004	4691	21	0	0	17	0	4	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0005	4693	21	0	14	0	2	5	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0006	4691	19	18	1	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0007	4693	16	0	0	16	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0008	4691	5	5	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/1	t0009	4691	5	0	2	0	2	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0010	4693	4	0	0	4	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0011	4691	3	3	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0012	4691	3	3	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0013	4693	3	2	1	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0014	4693	3	0	0	3	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0015	4693	3	0	1	0	2	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0016	4691	2	2	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0017	4691	2	2	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0018	4691	2	2	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0019	4691	2	1	1	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0020	4693	2	0	2	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0021	4693	2	0	0	2	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0022	4691	2	2	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0023	4693	1	0	0	1	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0024	4691	1	0	0	0	0	1	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0025	4691	1	1	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0026	4693	1	1	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0027	4691	1	0	0	1	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0028	4693	1	1	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0029	4693	1	0	1	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0030	4691	1	0	0	1	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0031	4691	1	1	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0032	4691	1	1	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0033	4691	1	0	0	1	0	0	copy fasta	ATOH8	chr2	85748991	85796383