JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLD5_chr1_242077986_242529697	0/0	t0070	7290	1	1	0	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0071	7288	1	0	0	0	0	1	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0072	7292	1	0	1	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0073	7290	1	0	0	1	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0074	7289	1	0	0	1	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0075	7290	1	0	0	1	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0076	7290	1	1	0	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0077	7290	1	0	1	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0078	7288	1	1	0	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0079	7291	1	1	0	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0080	7289	1	1	0	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0081	7291	1	0	1	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0082	7289	1	1	0	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0083	7290	1	1	0	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD5_chr1_242077986_242529697	0/0	t0084	7287	1	1	0	0	0	0	copy fasta	PLD5	chr1	242077986	242529697
PLD6_chr17_17195995_17211333	0/1	t0001	1820	196	5	39	119	11	21	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0002	1820	125	26	17	63	0	19	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0003	1820	39	32	1	1	0	5	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0004	1820	14	3	8	0	2	1	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0005	1820	12	0	6	0	4	2	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0006	1820	11	9	2	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0007	1820	7	4	3	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0008	1820	6	5	1	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0009	1820	5	4	1	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	1/0	t0010	1820	4	0	2	0	1	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0011	1820	3	0	0	3	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0012	1820	2	0	0	2	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0013	1820	2	0	1	0	0	1	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0014	1820	1	1	0	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0015	1820	1	1	0	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0016	1820	1	1	0	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0017	1820	1	1	0	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0018	1820	1	0	0	1	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0019	1820	1	0	1	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0020	1820	1	0	0	0	0	1	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0021	1820	1	0	0	1	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0022	1820	1	1	0	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLD6_chr17_17195995_17211333	0/0	t0023	1820	1	1	0	0	0	0	copy fasta	PLD6	chr17	17195995	17211333
PLEC_chr8_143910153_143944597	1/1	t0001	1161	192	10	42	104	10	24	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	t0002	1161	74	3	25	23	6	17	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	t0003	1161	35	32	3	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	t0004	1161	18	17	1	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	t0005	1160	16	14	2	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	t0006	1161	10	10	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	t0007	1161	4	0	0	4	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	t0008	1161	2	0	0	2	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	t0009	1161	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	t0010	1161	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	t0011	1161	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	t0012	1161	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597