JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEC_chr8_143910153_143944597	0/0	t0013	1161	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143944597	0/0	t0014	1161	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143944597
PLEC_chr8_143910153_143978529	1/1	t0001	1082	146	10	35	69	10	20	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	t0002	1082	72	3	26	24	6	13	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	t0003	1082	32	29	3	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	t0004	1082	18	17	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	t0005	1081	15	13	2	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	t0006	1082	8	8	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	t0007	1082	4	0	0	4	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	t0008	1082	2	2	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	t0009	1082	1	0	0	1	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	t0010	1082	1	0	1	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	t0011	1082	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	t0012	1082	1	1	0	0	0	0	copy fasta	PLEC	chr8	143910153	143978529
PLEC_chr8_143910153_143978529	0/0	t0013	1082	1	0	0	0	0	1	copy fasta	PLEC	chr8	143910153	143978529
PLEK2_chr14_67381984_67417165	1/1	t0001	452	352	88	68	159	6	29	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	t0002	452	1	0	0	0	0	1	copy fasta	PLEK2	chr14	67381984	67417165
PLEK2_chr14_67381984_67417165	0/0	t0003	452	1	0	0	1	0	0	copy fasta	PLEK2	chr14	67381984	67417165
PLEKHA1_chr10_122369708_122437345	1/0	t0001	2527	163	34	24	78	10	16	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/1	t0002	2528	139	25	24	70	7	12	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	t0003	2515	18	4	4	0	1	9	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	t0004	2527	16	16	0	0	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	t0005	2528	6	6	0	0	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	t0006	2528	4	0	3	0	0	1	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	t0007	2528	4	1	0	3	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	t0008	2528	2	0	0	0	0	2	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	t0009	2527	1	1	0	0	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	t0010	2528	1	0	1	0	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	t0011	2527	1	1	0	0	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	t0012	2527	1	0	0	1	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	t0013	2527	1	0	0	1	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA1_chr10_122369708_122437345	0/0	t0014	2528	1	0	0	1	0	0	copy fasta	PLEKHA1	chr10	122369708	122437345
PLEKHA2_chr8_38896346_38978912	0/0	t0001	4259	123	8	32	65	6	12	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0002	4254	66	11	14	29	6	6	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/1	t0003	4254	36	5	9	8	2	11	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0004	4255	16	1	1	13	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0005	4261	13	0	4	8	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0006	4253	9	0	3	6	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0007	4258	9	8	0	1	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0008	4257	7	1	1	4	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0009	4262	7	7	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0010	4259	6	0	0	6	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	1/0	t0011	4253	6	5	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0012	4253	5	5	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0013	4253	5	5	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0014	4253	4	4	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0015	4256	4	0	0	4	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0016	4262	4	4	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0017	4252	3	0	2	0	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0018	4263	3	1	0	2	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912