JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHA2_chr8_38896346_38978912	0/0	t0019	4241	2	2	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0020	4242	2	2	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0021	4253	2	0	0	1	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0022	4256	2	0	1	0	1	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0023	4261	2	0	2	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0024	4260	2	2	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0025	4262	2	2	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0026	4264	2	2	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0027	4252	2	2	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0028	4257	2	2	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0029	4260	2	1	1	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0030	4253	1	0	0	0	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0031	4254	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0032	4255	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0033	4254	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0034	4254	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0035	4255	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0036	4255	1	0	0	0	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0037	4254	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0038	4255	1	0	0	0	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0039	4256	1	0	0	0	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0040	4259	1	0	0	0	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0041	4259	1	0	0	1	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0042	4258	1	0	0	0	1	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0043	4259	1	0	0	0	0	1	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0044	4259	1	0	0	1	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0045	4258	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0046	4258	1	0	0	1	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0047	4258	1	0	0	1	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0048	4260	1	0	0	1	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0049	4254	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0050	4241	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0051	4253	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0052	4254	1	0	0	1	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0053	4255	1	0	1	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0054	4258	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0055	4254	1	1	0	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0056	4254	1	0	1	0	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA2_chr8_38896346_38978912	0/0	t0057	4254	1	0	0	1	0	0	copy fasta	PLEKHA2	chr8	38896346	38978912
PLEKHA3_chr2_178475457_178521463	0/0	t0001	12974	33	0	3	29	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0002	12973	20	0	3	14	1	2	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0003	12975	14	0	5	9	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0004	12974	12	0	9	2	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0005	12973	9	0	0	9	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0006	12990	8	0	0	5	0	3	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0007	12974	8	0	1	6	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0008	12986	8	0	2	6	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0009	12990	7	3	3	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0010	12989	6	2	1	0	2	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0011	12996	6	0	3	2	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463