JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
PLEKHA3_chr2_178475457_178521463	0/0	t0062	12974	1	0	0	1	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0063	12975	1	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0064	12975	1	0	0	1	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0065	12976	1	0	0	1	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0066	12975	1	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0067	12976	1	0	0	1	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0068	12975	1	0	0	1	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0069	12977	1	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0070	12977	1	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0071	12978	1	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0072	12978	1	0	0	1	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0073	12989	1	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	1/0	t0074	12990	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0075	12988	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0076	12990	1	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0077	12994	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0078	12990	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0079	12992	1	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0080	12994	1	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0081	12992	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0082	12992	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0083	12994	1	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0084	12993	1	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0085	12996	1	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0086	12991	1	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0087	12992	1	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0088	12993	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0089	12995	1	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0090	12994	1	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0091	12996	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0092	12997	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0093	12993	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0094	12995	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0095	12993	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0096	12994	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0097	12997	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0098	13002	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0099	12974	1	0	0	1	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0100	12968	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0101	12993	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0102	12996	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0103	12968	1	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0104	12970	1	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0105	12972	1	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0106	12971	1	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0107	12969	1	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0108	12975	1	0	0	1	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0109	12975	1	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0110	12976	1	0	0	1	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0111	12978	1	0	0	1	0	copy fasta	PLEKHA3	chr2	178475457	178521463