JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHA3_chr2_178475457_178521463	0/0	t0112	12997	1	0	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0113	12993	1	0	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0114	12992	1	0	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0115	12995	1	0	0	0	1	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0116	12991	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0117	12991	1	0	0	0	1	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0118	12991	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/1	t0119	12989	1	0	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0120	12992	1	0	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0121	12992	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0122	12994	1	0	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0123	12999	1	0	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0124	12993	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0125	12998	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0126	12996	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0127	12998	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0128	12999	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0129	12991	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0130	12974	1	0	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0131	12993	1	0	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0132	12978	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0133	12996	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0134	12990	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0135	12991	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0136	12971	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0137	12971	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0138	12973	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0139	12971	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0140	12976	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0141	12968	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0142	12959	1	0	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0143	12972	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0144	12981	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0145	12969	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0146	12973	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0147	12973	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0148	12965	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0149	12966	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0150	12980	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0151	12973	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0152	12975	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0153	12973	1	0	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0154	12974	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0155	12975	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0156	12974	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0157	12975	1	0	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0158	12977	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0159	12974	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0160	12974	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0161	12980	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463