JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHA3_chr2_178475457_178521463	0/0	t0162	12974	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0163	12975	1	0	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0164	12974	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0165	12975	1	0	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0166	12975	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0167	12982	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0168	12988	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0169	12982	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0170	12989	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0171	12983	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0172	12996	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0173	12980	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0174	12987	1	0	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0175	12997	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0176	12989	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0177	12998	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0178	12996	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0179	12988	1	0	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0180	12985	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0181	12977	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0182	12980	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0183	12987	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0184	12985	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0185	12988	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0186	12989	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0187	12987	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0188	12988	1	0	0	1	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0189	12994	1	0	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0190	12990	1	0	1	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0191	12992	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0192	12994	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0193	12994	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0194	12999	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0195	12968	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0196	12993	1	0	0	0	0	1	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0197	12985	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0198	12985	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA3_chr2_178475457_178521463	0/0	t0199	12985	1	1	0	0	0	0	copy fasta	PLEKHA3	chr2	178475457	178521463
PLEKHA4_chr19_48832097_48873617	1/0	t0001	734	144	11	36	66	6	24	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0002	728	72	33	13	20	5	1	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0003	734	16	8	2	4	0	2	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0004	736	16	3	9	0	3	1	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0005	728	11	9	2	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0006	734	9	7	0	0	0	2	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0007	736	7	0	3	4	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0008	732	6	6	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0009	734	5	3	0	0	0	2	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0010	728	2	2	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/1	t0011	734	2	0	0	0	0	1	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0012	728	1	0	0	1	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617