JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHA4_chr19_48832097_48873617	0/0	t0013	728	1	0	0	0	0	1	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0014	728	1	0	1	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0015	732	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0016	732	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0017	734	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0018	734	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0019	734	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0020	734	1	1	0	0	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA4_chr19_48832097_48873617	0/0	t0021	734	1	0	0	1	0	0	copy fasta	PLEKHA4	chr19	48832097	48873617
PLEKHA5_chr12_19124733_19381400	1/0	t0001	949	86	31	13	38	0	3	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/1	t0002	948	57	2	20	27	2	5	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0003	949	40	13	2	20	0	5	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0004	949	31	0	9	13	3	6	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0005	949	24	10	0	12	0	2	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0006	949	21	8	3	9	0	1	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0007	950	19	12	4	1	0	2	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0008	950	11	1	4	2	1	3	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0009	948	6	1	3	2	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0010	948	4	1	0	3	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0011	950	2	0	0	2	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0012	949	2	2	0	0	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0013	949	2	0	0	2	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0014	949	2	2	0	0	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0015	949	2	0	0	2	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0016	949	1	0	0	0	0	1	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0017	948	1	0	1	0	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0018	949	1	0	0	1	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0019	950	1	1	0	0	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0020	949	1	0	0	1	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0021	949	1	0	0	1	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA5_chr12_19124733_19381400	0/0	t0022	949	1	0	1	0	0	0	copy fasta	PLEKHA5	chr12	19124733	19381400
PLEKHA6_chr1_204213853_204364929	0/1	t0001	4264	93	30	15	34	2	11	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0002	4280	27	3	8	14	1	1	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0003	4264	13	9	2	0	0	2	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0004	4282	11	0	5	4	0	2	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0005	4264	10	0	9	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0006	4280	7	0	1	6	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0007	4262	7	6	1	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0008	4280	5	5	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0009	4272	5	5	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0010	4264	5	5	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0011	4262	5	0	4	0	1	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	1/0	t0012	4266	4	0	0	2	0	1	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0013	4266	3	0	0	1	2	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0014	4284	3	2	0	0	0	1	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0015	4284	3	0	0	0	0	3	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0016	4282	3	0	2	0	0	1	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0017	4280	3	0	0	3	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0018	4280	3	0	2	0	1	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0019	4278	3	0	1	2	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929