JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHA6_chr1_204213853_204364929	0/0	t0020	4274	3	3	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0021	4266	3	3	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0022	4260	3	3	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0023	4264	2	0	2	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0024	4266	2	0	1	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0025	4288	2	0	2	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0026	4284	2	0	1	0	0	1	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0027	4276	2	2	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0028	4276	2	1	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0029	4281	2	0	2	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0030	4282	2	0	2	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0031	4262	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0032	4264	1	0	0	0	0	1	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0033	4280	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0034	4264	1	0	0	0	1	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0035	4266	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0036	4266	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0037	4264	1	0	0	0	0	1	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0038	4264	1	0	1	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0039	4264	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0040	4264	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0041	4264	1	0	0	0	0	1	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0042	4264	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0043	4286	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0044	4286	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0045	4280	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0046	4278	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0047	4278	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0048	4280	1	0	1	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0049	4276	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0050	4276	1	0	1	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0051	4274	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0052	4272	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0053	4262	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0054	4264	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0055	4264	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0056	4264	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0057	4264	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0058	4287	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0059	4285	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0060	4283	1	0	1	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0061	4281	1	1	0	0	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA6_chr1_204213853_204364929	0/0	t0062	4264	1	0	0	1	0	0	copy fasta	PLEKHA6	chr1	204213853	204364929
PLEKHA7_chr11_16772297_17019414	1/0	t0001	1715	68	27	16	17	0	7	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/1	t0002	1715	64	1	17	35	2	8	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0003	1715	39	11	9	12	1	6	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0004	1715	26	20	2	0	3	1	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0005	1715	11	0	5	5	1	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0006	1715	7	7	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0007	1715	7	7	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414