Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATOH8_chr2_85748991_85796383	0/0	t0034	4691	1	1	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0035	4691	1	0	1	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0036	4693	1	1	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0037	4693	1	0	0	1	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0038	4693	1	0	1	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0039	4693	1	0	0	1	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0040	4691	1	0	1	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0041	4691	1	1	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0042	4693	1	0	1	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0043	4693	1	0	0	1	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0044	4693	1	0	0	1	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	t0045	4693	1	0	1	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOSA_chr15_52576321_52684388	1/1	t0001	1496	237	53	39	119	3	21	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	t0002	1496	93	15	14	44	3	17	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	t0003	1496	12	12	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	t0004	1496	7	7	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	t0005	1496	6	4	2	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	t0006	1496	1	1	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	t0007	1496	1	0	1	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	t0008	1496	1	1	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	t0009	1496	1	1	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	t0010	1496	1	1	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	t0011	1496	1	1	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	t0012	1496	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSB_chr9_35099117_35120862	1/1	t0001	1382	388	81	71	180	15	39	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	t0002	1382	23	0	0	22	0	1	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	t0003	1378	7	7	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	t0004	1382	3	3	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	t0005	1382	2	0	0	1	0	1	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	t0006	1382	2	0	0	0	1	1	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	t0007	1382	2	2	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	t0008	1382	1	1	0	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	t0009	1382	1	0	0	0	0	1	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	t0010	1382	1	0	1	0	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	t0011	1382	1	0	0	0	0	1	copy fasta	ATOSB	chr9	35099117	35120862
ATOSB_chr9_35099117_35120862	0/0	t0012	1382	1	0	0	1	0	0	copy fasta	ATOSB	chr9	35099117	35120862
ATOX1_chr5_151737822_151763631	1/1	t0001	265	365	97	72	146	16	32	copy fasta	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	t0002	276	9	1	1	7	0	0	copy fasta	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	t0003	265	1	0	1	0	0	0	copy fasta	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	t0004	265	1	0	0	1	0	0	copy fasta	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	t0005	265	1	0	0	1	0	0	copy fasta	ATOX1	chr5	151737822	151763631
ATOX1_chr5_151737822_151763631	0/0	t0006	265	1	0	0	1	0	0	copy fasta	ATOX1	chr5	151737822	151763631
ATP10A_chr15_25673712_25868327	1/1	t0001	861	274	83	58	83	12	36	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	t0002	861	21	0	6	11	0	4	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	t0003	850	3	3	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	t0004	871	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10A_chr15_25673712_25868327	0/0	t0005	861	1	1	0	0	0	0	copy fasta	ATP10A	chr15	25673712	25868327
ATP10B_chr5_160558120_160857211	0/0	t0001	3180	44	5	4	27	0	8	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	t0002	3180	31	10	9	4	3	5	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	t0003	3180	19	0	5	9	0	5	copy fasta	ATP10B	chr5	160558120	160857211