JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHA7_chr11_16772297_17019414	0/0	t0008	1715	4	4	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0009	1715	4	3	1	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0010	1715	3	3	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0011	1715	2	2	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0012	1715	2	0	2	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0013	1715	2	2	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0014	1715	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0015	1715	1	0	0	0	1	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0016	1715	1	0	0	1	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0017	1715	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA7_chr11_16772297_17019414	0/0	t0018	1715	1	1	0	0	0	0	copy fasta	PLEKHA7	chr11	16772297	17019414
PLEKHA8_chr7_30023412_30089650	1/1	t0001	6215	112	29	19	47	6	9	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0002	6215	35	12	7	10	2	4	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0003	6215	18	3	2	13	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0004	6215	18	3	0	14	0	1	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0005	6215	6	4	1	0	1	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0006	6215	5	4	1	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0007	6215	3	0	2	0	1	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0008	6215	3	2	1	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0009	6216	3	3	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0010	6215	3	3	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0011	6215	3	0	1	1	0	1	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0012	6215	3	3	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0013	6215	2	0	2	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0014	6215	2	2	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0015	6215	1	0	1	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0016	6215	1	0	0	1	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0017	6215	1	0	0	0	0	1	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0018	6215	1	1	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0019	6215	1	1	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0020	6215	1	1	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0021	6215	1	1	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0022	6215	1	1	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0023	6215	1	0	0	1	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0024	6215	1	1	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0025	6216	1	1	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0026	6216	1	1	0	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0027	6215	1	0	0	1	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0028	6215	1	0	0	1	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0029	6215	1	0	1	0	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0030	6215	1	0	0	0	0	1	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0031	6215	1	0	0	1	0	0	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHA8_chr7_30023412_30089650	0/0	t0032	6215	1	0	0	0	0	1	copy fasta	PLEKHA8	chr7	30023412	30089650
PLEKHB1_chr11_73641581_73667819	0/1	t0001	1246	346	70	69	151	16	39	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	t0002	1246	51	6	7	27	0	11	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	t0003	1246	6	6	0	0	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	t0004	1246	3	3	0	0	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	1/0	t0005	1246	3	2	0	0	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	t0006	1246	2	2	0	0	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	t0007	1246	1	1	0	0	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819