JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHB1_chr11_73641581_73667819	0/0	t0008	1246	1	0	0	1	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	t0009	1246	1	1	0	0	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	t0010	1246	1	1	0	0	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB1_chr11_73641581_73667819	0/0	t0011	1246	1	0	0	1	0	0	copy fasta	PLEKHB1	chr11	73641581	73667819
PLEKHB2_chr2_131100336_131154845	1/0	t0001	3144	146	32	39	43	7	24	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/1	t0002	3146	67	23	11	22	5	5	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0003	3145	9	9	0	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0004	3146	6	6	0	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0005	3145	6	4	2	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0006	3143	4	3	1	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0007	3144	4	4	0	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0008	3144	3	3	0	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0009	3145	3	1	0	2	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0010	3144	2	2	0	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0011	3144	1	1	0	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0012	3144	1	0	1	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0013	3146	1	0	0	1	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0014	3144	1	0	0	1	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0015	3144	1	0	0	0	0	1	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0016	3144	1	1	0	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0017	3144	1	1	0	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0018	3146	1	1	0	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0019	3146	1	1	0	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0020	3145	1	1	0	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0021	3145	1	0	0	1	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0022	3146	1	0	0	0	0	1	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0023	3146	1	1	0	0	0	0	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHB2_chr2_131100336_131154845	0/0	t0024	3144	1	0	0	0	0	1	copy fasta	PLEKHB2	chr2	131100336	131154845
PLEKHD1_chr14_69479728_69536551	0/1	t0001	3371	161	33	31	60	14	22	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	1/0	t0002	3371	78	32	7	21	2	15	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0003	3371	34	7	5	21	1	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0004	3371	9	0	0	9	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0005	3371	5	0	0	3	0	2	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0006	3371	4	4	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0007	3371	3	1	2	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0008	3371	3	2	1	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0009	3367	2	2	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0010	3371	2	1	1	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0011	3371	2	2	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0012	3371	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0013	3371	1	0	0	1	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0014	3371	1	0	0	0	0	1	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0015	3371	1	0	0	1	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0016	3367	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0017	3371	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0018	3371	1	0	1	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0019	3371	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0020	3371	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0021	3371	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0022	3344	1	0	0	1	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551