JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHD1_chr14_69479728_69536551	0/0	t0023	3371	1	0	0	0	1	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0024	3371	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0025	3371	1	1	0	0	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHD1_chr14_69479728_69536551	0/0	t0026	3371	1	0	0	1	0	0	copy fasta	PLEKHD1	chr14	69479728	69536551
PLEKHF1_chr19_29660461_29680477	1/1	t0001	860	346	80	64	145	14	41	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	t0002	860	70	1	16	46	0	7	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	t0003	860	7	0	0	7	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	t0004	860	4	3	1	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	t0005	860	3	3	0	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	t0006	860	3	3	0	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	t0007	860	2	2	0	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	t0008	860	1	0	1	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	t0009	860	1	1	0	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	t0010	860	1	1	0	0	0	0	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	t0011	860	1	0	0	0	0	1	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF1_chr19_29660461_29680477	0/0	t0012	860	1	0	0	0	0	1	copy fasta	PLEKHF1	chr19	29660461	29680477
PLEKHF2_chr8_95128785_95161685	1/0	t0001	2152	307	57	62	132	12	43	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0002	2148	24	11	9	0	0	4	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/1	t0003	2152	17	10	5	0	0	1	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0004	2152	9	8	1	0	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0005	2152	6	6	0	0	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0006	2150	4	4	0	0	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0007	2152	4	0	0	4	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0008	2152	2	0	0	2	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0009	2152	2	0	0	2	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0010	2152	2	2	0	0	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0011	2152	2	0	2	0	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0012	2152	1	1	0	0	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0013	2152	1	1	0	0	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0014	2152	1	0	0	1	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0015	2152	1	0	1	0	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHF2_chr8_95128785_95161685	0/0	t0016	2152	1	0	0	1	0	0	copy fasta	PLEKHF2	chr8	95128785	95161685
PLEKHG1_chr6_150594885_150848665	1/1	t0001	3060	137	61	19	44	3	8	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0002	3060	33	1	7	21	0	4	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0003	3060	26	0	10	9	0	7	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0004	3061	10	0	8	0	1	1	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0005	3060	9	1	3	5	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0006	3060	9	0	2	6	0	1	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0007	3052	8	1	1	3	1	2	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0008	3061	7	0	1	0	2	4	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0009	3061	3	2	1	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0010	3061	3	1	1	0	1	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0011	3060	2	0	1	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0012	3060	2	1	1	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0013	3061	2	2	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0014	3072	2	0	0	2	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0015	3060	1	0	0	0	0	1	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0016	3060	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0017	3052	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0018	3060	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665