JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHG1_chr6_150594885_150848665	0/0	t0019	3060	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0020	3060	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0021	3060	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0022	3060	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0023	3060	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0024	3060	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0025	3060	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0026	3060	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0027	3060	1	0	0	0	1	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0028	3060	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0029	3060	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0030	3061	1	0	0	0	1	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0031	3060	1	1	0	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0032	3061	1	0	1	0	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG1_chr6_150594885_150848665	0/0	t0033	3072	1	0	0	1	0	0	copy fasta	PLEKHG1	chr6	150594885	150848665
PLEKHG2_chr19_39407669_39433415	1/1	t0001	3888	113	4	26	63	4	14	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0002	3886	77	4	11	49	4	9	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0003	3885	51	18	10	18	3	2	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0004	3885	24	6	6	4	3	5	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0005	3885	14	7	0	6	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0006	3888	11	2	4	2	1	2	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0007	3886	9	9	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0008	3885	7	4	0	3	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0009	3886	7	0	0	7	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0010	3888	7	4	3	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0011	3886	7	1	1	1	0	4	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0012	3885	6	1	0	4	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0013	3885	6	6	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0014	3885	4	4	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0015	3886	4	0	3	0	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0016	3887	3	0	1	1	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0017	3889	3	0	0	3	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0018	3886	2	0	0	2	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0019	3885	2	2	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0020	3887	2	0	1	0	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0021	3888	2	0	0	1	1	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0022	3888	2	0	0	2	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0023	3885	2	2	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0024	3886	2	0	0	2	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0025	3885	2	0	2	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0026	3889	2	2	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0027	3885	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0028	3886	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0029	3885	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0030	3885	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0031	3885	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0032	3885	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0033	3886	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0034	3885	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0035	3884	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415