JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHG2_chr19_39407669_39433415	0/0	t0036	3885	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0037	3885	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0038	3886	1	0	0	0	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0039	3886	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0040	3886	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0041	3886	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0042	3886	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0043	3885	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0044	3886	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0045	3886	1	0	0	0	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0046	3888	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0047	3888	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0048	3888	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0049	3889	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0050	3889	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0051	3888	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0052	3888	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0053	3886	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0054	3886	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0055	3885	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0056	3885	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0057	3886	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0058	3886	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0059	3885	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0060	3885	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0061	3886	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0062	3885	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0063	3886	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0064	3885	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0065	3885	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0066	3885	1	1	0	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0067	3885	1	0	0	0	0	1	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0068	3886	1	0	1	0	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG2_chr19_39407669_39433415	0/0	t0069	3888	1	0	0	1	0	0	copy fasta	PLEKHG2	chr19	39407669	39433415
PLEKHG3_chr14_64699424_64755249	0/0	t0001	6866	46	9	18	11	2	6	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	1/0	t0002	6867	28	9	7	7	1	3	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0003	6866	18	1	2	11	2	2	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0004	6867	15	1	3	6	2	3	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0005	6865	9	2	1	2	0	4	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0006	6867	8	8	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/1	t0007	6864	6	0	2	0	0	3	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0008	6867	4	0	0	4	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0009	6864	4	2	2	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0010	6866	4	4	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0011	6770	4	4	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0012	6866	3	2	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0013	6867	3	3	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0014	6866	3	2	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0015	6866	3	2	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0016	6881	3	2	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249