JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHG3_chr14_64699424_64755249	0/0	t0017	6882	3	3	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0018	6866	3	0	0	3	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0019	6876	3	2	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0020	6867	3	0	0	0	0	3	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0021	6866	2	1	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0022	6867	2	0	1	0	0	1	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0023	6867	2	0	0	2	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0024	6869	2	2	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0025	6867	2	2	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0026	6879	2	0	0	0	0	2	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0027	6880	2	2	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0028	6882	2	1	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0029	6865	2	2	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0030	6869	2	2	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0031	6864	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0032	6865	1	0	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0033	6865	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0034	6865	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0035	6866	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0036	6866	1	0	0	0	0	1	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0037	6866	1	0	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0038	6866	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0039	6866	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0040	6866	1	0	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0041	6866	1	0	0	0	0	1	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0042	6866	1	0	0	0	1	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0043	6866	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0044	6866	1	0	0	0	0	1	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0045	6867	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0046	6868	1	0	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0047	6867	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0048	6867	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0049	6877	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0050	6867	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0051	6867	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0052	6867	1	0	0	0	0	1	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0053	6867	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0054	6867	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0055	6770	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0056	6880	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0057	6882	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0058	6886	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0059	6887	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0060	6888	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0061	6866	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0062	6866	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0063	6867	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0064	6866	1	0	0	0	0	1	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0065	6865	1	0	0	0	0	1	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0066	6865	1	0	1	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249