JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHG3_chr14_64699424_64755249	0/0	t0067	6865	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0068	6865	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0069	6866	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0070	6867	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0071	6867	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0072	6866	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0073	6866	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0074	6865	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0075	6864	1	0	0	0	0	1	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0076	6866	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0077	6778	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0078	6866	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0079	6867	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0080	6867	1	0	0	1	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0081	6877	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0082	6867	1	0	0	0	0	1	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0083	6868	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0084	6870	1	0	0	0	0	1	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG3_chr14_64699424_64755249	0/0	t0085	6866	1	1	0	0	0	0	copy fasta	PLEKHG3	chr14	64699424	64755249
PLEKHG4B_chr5_87168_194966	0/0	t0001	7712	11	1	1	9	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0002	7691	7	0	5	1	1	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0003	7695	7	1	0	3	0	3	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0004	7704	5	0	5	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0005	7712	4	2	0	1	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0006	7716	4	2	0	1	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0007	7716	4	0	0	2	1	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0008	7711	4	4	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0009	7699	4	0	2	2	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0010	7699	3	0	1	0	1	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0011	7695	3	0	1	2	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0012	7704	3	0	3	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0013	7708	3	0	1	1	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0014	7712	3	0	0	3	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0015	7712	3	0	2	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0016	7716	3	0	0	3	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0017	7703	3	0	2	0	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0018	7711	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0019	7719	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0020	7707	2	1	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0021	7694	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0022	7708	2	0	2	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0023	7704	2	1	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0024	7704	2	1	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0025	7708	2	1	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	1/0	t0026	7708	2	0	0	0	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0027	7712	2	0	2	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0028	7712	2	0	1	0	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0029	7716	2	1	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0030	7720	2	1	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0031	7720	2	0	2	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966