JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHG4B_chr5_87168_194966	0/0	t0032	7711	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0033	7718	2	2	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0034	7687	2	1	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0035	7671	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0036	7720	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0037	7707	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0038	7671	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0039	7671	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0040	7667	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0041	7707	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0042	7704	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0043	7704	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0044	7699	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0045	7707	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0046	7707	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0047	7716	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0048	7716	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0049	7707	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0050	7715	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0051	7711	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0052	7719	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0053	7711	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0054	7707	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0055	7715	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0056	7719	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0057	7707	1	0	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0058	7719	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0059	7710	1	0	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0060	7699	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0061	7679	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0062	7695	1	0	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0063	7699	1	0	0	0	1	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0064	7694	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0065	7691	1	0	0	0	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0066	7699	1	0	0	0	1	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0067	7699	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0068	7711	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0069	7711	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0070	7695	1	0	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0071	7699	1	0	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0072	7703	1	0	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0073	7712	1	0	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0074	7720	1	0	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0075	7691	1	0	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0076	7671	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0077	7667	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0078	7667	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0079	7700	1	1	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0080	7708	1	0	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0081	7704	1	0	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966