JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PLEKHG4B_chr5_87168_194966	0/0	t0132	7697	1	0	1	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0133	7703	1	0	0	1	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/1	t0134	7705	1	0	0	0	0	0	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0135	7703	1	0	0	0	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4B_chr5_87168_194966	0/0	t0136	7693	1	0	0	0	0	1	copy fasta	PLEKHG4B	chr5	87168	194966
PLEKHG4_chr16_67274532_67294480	1/1	t0001	937	302	87	71	93	18	31	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	t0002	937	11	0	0	11	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	t0003	937	3	2	1	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	t0004	937	2	0	2	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	t0005	937	2	2	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	t0006	937	1	1	0	0	0	0	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG4_chr16_67274532_67294480	0/0	t0007	937	1	0	0	0	0	1	copy fasta	PLEKHG4	chr16	67274532	67294480
PLEKHG5_chr1_6462122_6496667	1/1	t0001	560	182	24	31	84	3	38	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	t0002	560	91	72	10	4	1	4	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	t0003	560	10	0	4	6	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	t0004	560	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	t0005	560	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	t0006	560	1	0	1	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	t0007	560	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	t0008	548	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG6_chr12_6305682_6333506	1/1	t0001	597	255	39	44	130	11	29	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0002	598	90	10	16	45	5	14	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0003	597	43	20	1	21	0	1	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0004	597	12	0	12	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0005	597	7	5	1	1	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0006	597	6	6	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0007	597	5	5	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0008	597	4	0	2	1	0	1	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0009	598	4	2	1	0	0	1	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0010	598	3	0	0	3	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0011	598	3	3	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0012	597	2	2	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0013	597	2	0	2	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0014	597	2	0	0	2	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0015	598	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0016	598	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0017	597	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0018	598	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0019	598	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0020	597	1	0	1	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0021	598	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0022	597	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0023	597	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	t0024	598	1	0	0	1	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG7_chr12_92697989_92777455	0/0	t0001	2572	77	15	15	28	5	14	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0002	2574	23	2	6	4	2	9	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/1	t0003	2569	22	2	5	4	3	7	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	1/0	t0004	2566	21	7	3	6	3	1	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0005	2567	18	16	2	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	t0006	2570	16	11	5	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455